View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_low_9 (Length: 560)

Name: NF16758_low_9
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_low_9
NF16758_low_9
[»] chr4 (23 HSPs)
chr4 (11-544)||(1547953-1548487)
chr4 (11-170)||(1552668-1552830)
chr4 (23-314)||(546961-547255)
chr4 (22-200)||(1600466-1600647)
chr4 (24-307)||(570400-570680)
chr4 (12-70)||(8187095-8187153)
chr4 (13-70)||(1519146-1519203)
chr4 (11-87)||(532225-532301)
chr4 (12-215)||(3438422-3438628)
chr4 (30-129)||(644885-644984)
chr4 (30-278)||(21834174-21834422)
chr4 (11-129)||(553515-553633)
chr4 (12-70)||(8184034-8184092)
chr4 (30-151)||(53761692-53761816)
chr4 (21-65)||(659755-659799)
chr4 (11-75)||(1524485-1524549)
chr4 (11-70)||(12121461-12121520)
chr4 (100-285)||(8186877-8187065)
chr4 (23-84)||(1537757-1537818)
chr4 (11-47)||(12116602-12116638)
chr4 (23-70)||(1489365-1489412)
chr4 (11-70)||(1513411-1513470)
chr4 (13-70)||(7225887-7225944)
[»] chr8 (10 HSPs)
chr8 (23-278)||(18315066-18315324)
chr8 (11-225)||(32151337-32151551)
chr8 (178-309)||(17627821-17627952)
chr8 (30-129)||(28246240-28246339)
chr8 (24-75)||(21235607-21235658)
chr8 (11-70)||(27922544-27922603)
chr8 (28-206)||(17636262-17636447)
chr8 (409-538)||(17635918-17636047)
chr8 (416-512)||(17643238-17643334)
chr8 (404-544)||(18314893-18315033)
[»] chr3 (9 HSPs)
chr3 (23-314)||(51113541-51113832)
chr3 (23-239)||(13470567-13470783)
chr3 (11-131)||(51120836-51120956)
chr3 (176-305)||(514494-514623)
chr3 (30-239)||(51764275-51764484)
chr3 (30-70)||(1657306-1657346)
chr3 (15-55)||(27005791-27005831)
chr3 (11-68)||(33714861-33714918)
chr3 (15-55)||(36811046-36811086)
[»] chr2 (2 HSPs)
chr2 (11-309)||(32785537-32785835)
chr2 (11-232)||(1037503-1037727)
[»] chr7 (2 HSPs)
chr7 (25-204)||(10614643-10614822)
chr7 (30-278)||(15091947-15092195)
[»] chr6 (23 HSPs)
chr6 (11-152)||(6432197-6432341)
chr6 (11-248)||(6426547-6426784)
chr6 (25-205)||(7119207-7119387)
chr6 (25-205)||(7131685-7131865)
chr6 (11-152)||(6394900-6395044)
chr6 (23-152)||(6416014-6416146)
chr6 (24-90)||(12102315-12102381)
chr6 (23-132)||(6589265-6589374)
chr6 (25-152)||(6402910-6403040)
chr6 (11-90)||(6410042-6410121)
chr6 (30-129)||(11936220-11936319)
chr6 (30-129)||(11948200-11948299)
chr6 (22-88)||(6423264-6423330)
chr6 (24-152)||(6594525-6594656)
chr6 (31-147)||(19632495-19632611)
chr6 (11-86)||(6596916-6596991)
chr6 (176-239)||(9411556-9411619)
chr6 (177-278)||(6432363-6432464)
chr6 (405-481)||(9411788-9411864)
chr6 (22-152)||(7994101-7994234)
chr6 (24-87)||(9410751-9410814)
chr6 (24-75)||(9411404-9411455)
chr6 (22-58)||(28935096-28935132)
[»] chr5 (5 HSPs)
chr5 (23-234)||(41889391-41889605)
chr5 (13-131)||(20478025-20478143)
chr5 (23-67)||(41901542-41901586)
chr5 (23-199)||(32267523-32267699)
chr5 (102-211)||(41901398-41901510)
[»] chr1 (3 HSPs)
chr1 (180-314)||(9581276-9581410)
chr1 (23-278)||(19468295-19468550)
chr1 (180-289)||(9586844-9586953)


Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 11 - 544
Target Start/End: Complemental strand, 1548487 - 1547953
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaa-gtagcttcacttttaaactacgagctaagttca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1548487 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagttca 1548388  T
Q  110 actgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548387 actgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcga 1548288  T
Q  210 agaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaattagaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548287 agaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaattagaa 1548188  T
Q  310 gtctcaaaactatttccaaagttgtattccattctgatctcactaagtgaaggactgttcttaacgaggtcaaacaacattgaacattctcggggttcaa 409  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  1548187 gtctcaaaactattttcaaagttgtattccattctgatctcactaagtgaaggactgttcttaacgaggtcaaacaacatcgaacattcttggggttcaa 1548088  T
Q  410 aataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgatggcttc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548087 aataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgatggcttc 1547988  T
Q  510 ttcaagacacttacaactcttgaacaagtgaaaaa 544  Q
    |||||||||||||||||| || |||||||||||||    
T  1547987 ttcaagacacttacaactgttaaacaagtgaaaaa 1547953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 1552830 - 1552668
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttta---aactacgagctaagtt 107  Q
    |||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||   ||||| | ||||||||    
T  1552830 catcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtagcttcccttctataaaactatgggctaagtt 1552731  T
Q  108 caactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgca 170  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1552730 caaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccagtgca 1552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 546961 - 547255
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    ||||| |||||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| ||||||  ||||| |   | ||||||||| || || |||||    
T  546961 ttgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatctt 547060  T
Q  123 acaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 219  Q
    |||||||||   |||||| ||||||||||  || || ||||||  ||  |||| | | |||||||||||||||||||||||||| || |||| ||| |||    
T  547061 acaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattggggaacatggaaggaaacatt 547160  T
Q  220 ttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaattagaagtctc 314  Q
    |||||| |||||||||||| || |||||| | || ||||  ||| ||||| |||||||| ||||||||||  ||| |||||||||||||| ||||    
T  547161 ttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctc 547255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 1600466 - 1600647
Alignment:
Q  22 cttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatct 121  Q
    ||||||| ||||||||||||||||||||||||  ||| ||||||||||| |||  | ||||||| | || |||   | ||||||||||| |||||||| |    
T  1600466 cttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaattt 1600565  T
Q  122 tacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggg 200  Q
    || || ||||   |||||||| |||||||||||| || ||||||  | ||||| |  |||||||||||||||||||||||||    
T  1600566 tagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattggg 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 307
Target Start/End: Original strand, 570400 - 570680
Alignment:
Q  24 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 123  Q
    ||||| |||||||||||||||||| |||||| ||| ||||||||||| |||| | || ||||||||| | |   ||||||||||||| || ||||  |||    
T  570400 tgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagttta 570499  T
Q  124 caacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttga 223  Q
    |||||||||||||||| ||||||||  |||   |||||   | |||||| | | |||||||| |  ||||||||||||||||| |||| ||| |||   |    
T  570500 caacatcttaaaacttgacaaatactatcg---gatatctgattgcaataacttaaatcaagtatctgcaaattggggaaaatagaagcaaacattaaaa 570596  T
Q  224 tggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaattag 307  Q
    || ||||||| ||||| | || |||| |||||||  | || ||||| |||||| |  |||||||||  |||||  |||||||||    
T  570597 tgttttcatcacttaaccatgtattgcgagtcaagaatagagacttcaattgatggtttacaacaaattccattgaagaattag 570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 8187153 - 8187095
Alignment:
Q  12 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1519203 - 1519146
Alignment:
Q  13 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    |||||||  |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 532225 - 532301
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 87  Q
    ||||||||||  |||||| |||||||||||||||||| || ||||| | ||||||||||| ||||||||| ||||||    
T  532225 catcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcact 532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 3438628 - 3438422
Alignment:
Q  12 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaac 111  Q
    ||||||||  ||||||||||||||| |||| ||||||| ||| | ||  |||||||||| | ||   |  ||||||  ||||| || ||||||||||||     
T  3438628 atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaa 3438529  T
Q  112 tgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcg 208  Q
    ||||||||||||||||||   |||||||||| |  || ||||||||| ||||||     ||| |   ||| ||||||||| ||||||||||||||||| |    
T  3438528 tgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaattggggaaaatag 3438429  T
Q  209 aagaaaa 215  Q
    |||||||    
T  3438428 aagaaaa 3438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 644885 - 644984
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |  ||||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  644885 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 644984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 21834422 - 21834174
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    |||||||| |||||||||||| ||||||| | ||||||| |  | | |||||||||||||  ||| ||  | ||||||||| ||  ||||||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 21834323  T
Q  130 ---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatgg 226  Q
       ||||||||||| |||||||||   ||||||||     || ||  | ||||||||||||| || |||||||||||||| |||| ||| ||| ||||      
T  21834322 ttccttaaaacttcgcaaatacct---tctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattc 21834226  T
Q  227 tttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 278  Q
    |||||||  |||| | ||||||| |   |||| |||| ||||||||||||||    
T  21834225 tttcatcatttaaccatgaattgcggcccaaaaagagagactttaattgagg 21834174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 553515 - 553633
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||  ||||||  ||||||||||||||||||||||||| ||| || |||||||| |  | ||| ||||||| || |||  || | |||||||||    
T  553515 catcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaa 553614  T
Q  111 ctgtctaatcttacaacat 129  Q
     |||||||| |||||||||    
T  553615 atgtctaatgttacaacat 553633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 8184092 - 8184034
Alignment:
Q  12 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  8184092 atcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 53761816 - 53761692
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    ||||||||||||| |||| || ||||||| | ||||||||| ||||| |||||||||| || |||     ||||||||||| || ||||| |||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  130 ---cttaaaacttcacaaatacctt 151  Q
       |||||||||| |||||||||||    
T  53761716 ctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 659755 - 659799
Alignment:
Q  21 acttgtatgtgacaagttcaacacctccagtttgggaatttcaaa 65  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  659755 acttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 1524549 - 1524485
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 75  Q
    ||||||||| ||||||| ||||||| |||||||||||||  ||||||| ||||||||||| ||||    
T  1524549 catcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 12121520 - 12121461
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    ||||||||| | |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  12121520 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 285
Target Start/End: Complemental strand, 8187065 - 8186877
Alignment:
Q  100 gctaagttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 196  Q
    ||||||||||| |  ||||||| |||||||||    ||||||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||||||    
T  8187065 gctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaat 8186966  T
Q  197 tggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttaca 285  Q
    ||||||| |  ||||| || |||| || | ||||||  ||||| |   |||||| | |||||| ||| ||||| | |||||||||||||    
T  8186965 tggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtaaatcaaactgagagacttcagttgaggtcttaca 8186877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 1537818 - 1537757
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttc 84  Q
    |||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | ||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 12116638 - 12116602
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctc 47  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12116638 catcatcaacacttgtatgtgacaagttcaacacctc 12116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1489412 - 1489365
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 1513470 - 1513411
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    ||||||||| | |||||  ||||||||||||||| || |||||||||| |||||||||||    
T  1513470 catcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 7225944 - 7225887
Alignment:
Q  13 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    |||||||  |||||||||||||||||||| ||||||| || | ||| |||||||||||    
T  7225944 tcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttca 7225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 18315324 - 18315066
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatct- 121  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| | || ||  ||||||||||||||||||||||||||     
T  18315324 ttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgagctaagttcaactgtctaatctc 18315225  T
Q  122 --tacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 219  Q
       ||||| || |||||||| |||||||||||| || | ||||  |  ||| |   ||||||||||||  ||||||||||||||||| ||||||||||||    
T  18315224 agaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaagaaaatatt 18315125  T
Q  220 ttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 278  Q
    |||||| |||| |||||||| | |||||||  ||| |||| ||| ||||||||||||||    
T  18315124 ttgatgctttcctctcttaaccatgaattgcaagtaaaacggagagactttaattgagg 18315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 32151337 - 32151551
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||  ||||||  ||||||||| ||||||||||| |||| || ||| ||||||| |||| | |||||||| | |||||  |  |  || |||||    
T  32151337 catcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagcttcacatgtaaacagccggtgaaattcaa 32151436  T
Q  111 ctgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaa 210  Q
     || ||||||| | | ||||||||||||| |||||| ||||| || ||||||  |  ||||    |||||||||||||||||||||| |||||||| |||    
T  32151437 atgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaa 32151536  T
Q  211 gaaaatattttgatg 225  Q
    | ||| |||||||||    
T  32151537 gcaaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 17627952 - 17627821
Alignment:
Q  178 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgag 277  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||| | ||    |||||||  || |||| |||| || ||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag 17627853  T
Q  278 gtcttacaacaaggtccatgaaagaattagaa 309  Q
    | |||||||| |  ||||  ||||||||||||    
T  17627852 ggcttacaacgaaatccaccaaagaattagaa 17627821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 28246339 - 28246240
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || ||| ||||| ||| ||||| |||||||| |||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacat 28246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 21235607 - 21235658
Alignment:
Q  24 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 75  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21235607 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 27922544 - 27922603
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    ||||||||| | |||||| |||||||||||||||||||| |||||||| |||||||||||    
T  27922544 catcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 17636447 - 17636262
Alignment:
Q  28 tgtgacaagttcaacacctccagtttgggaatttcaaagttca----gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 123  Q
    |||||||||||||||||||||| |||||||| |||||||||||     || | |||| |||||| || |||  ||  |||||||||| || ||||| |||    
T  17636447 tgtgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatatta 17636348  T
Q  124 caacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaat 206  Q
     |||||   |||||||||| |||||||||||  ||||||||   | ||||||     ||||||||||| |||||||||||||||||    
T  17636347 gaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatctcgtaaatcaagcagctgcaaattggggaaaat 17636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 538
Target Start/End: Complemental strand, 17636047 - 17635918
Alignment:
Q  409 aaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgatggctt 508  Q
    |||||| ||||||| ||||||||||| |||||| ||  ||||   |||||||| ||||||||  | ||||||| ||   ||||    |||||||||||||    
T  17636047 aaataactggtaaatgataaagacctcaatgtttgtctctcaagaagagcagaggcaataccggcattggttatttgttgacaattcaatatgatggctt 17635948  T
Q  509 cttcaagacacttacaactcttgaacaagt 538  Q
    |||||||| |||| ||| ||||||||||||    
T  17635947 cttcaagaaacttccaattcttgaacaagt 17635918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 512
Target Start/End: Complemental strand, 17643334 - 17643238
Alignment:
Q  416 tggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgatggcttcttc 512  Q
    ||||||| ||||||||||| || ||| |   |||||  ||||||||||||| |||| ||||||||| ||||  ||| || ||||||||||| |||||    
T  17643334 tggtaaatgataaagacctcaacgttggcctctcacgtagagcagaagcaacaccagcgttggttatttcatcacagcgcaatatgatggcctcttc 17643238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 544
Target Start/End: Complemental strand, 18315033 - 18314893
Alignment:
Q  404 gttcaaaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgat 503  Q
    ||||||| ||| ||| || |||||||||||| || ||| ||  ||||| ||||||| ||||||||||  ||||||||| || | ||||   |||||||||    
T  18315033 gttcaaagtaactggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgat 18314934  T
Q  504 ggcttcttcaagacacttacaactcttgaacaagtgaaaaa 544  Q
     |  ||||| |||  ||||||  ||||||||||||| ||||    
T  18314933 tgtctcttcgagaagcttacagttcttgaacaagtggaaaa 18314893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 23 - 314
Target Start/End: Complemental strand, 51113832 - 51113541
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||||| ||||||||  ||||||||||||||||||  ||||||||||| |||||||||||||| |||| |||    |||||| ||||| || ||||| ||    
T  51113832 ttgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaatttt 51113733  T
Q  123 acaacatc---ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 219  Q
    ||||||||   ||||||||| |||||||||||||   |||||  ||  ||||| | | |||||||| || |||| |||||||||||| |||| ||  |||    
T  51113732 acaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaatggaagcaatcatt 51113636  T
Q  220 ttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaattagaagtctc 314  Q
     ||||| | ||||||||||| | || |||||||  |||   ||| ||||||||||| |||||||||||||   |||| |||||||||||| ||||    
T  51113635 atgatgctctcatctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctc 51113541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 13470783 - 13470567
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||||| ||||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||    
T  13470783 ttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatctt 13470684  T
Q  123 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 219  Q
    |||||||   |||||||||| ||||||||||   | ||||| |  | |||||  | ||||||||||||| ||||||||||||||| | |||| ||| |||    
T  13470683 acaacatatccttaaaacttgacaaatacct---tttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacatt 13470587  T
Q  220 ttgatggtttcatctcttaa 239  Q
     |||||  |||||| |||||    
T  13470586 atgatgccttcatcacttaa 13470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 51120956 - 51120836
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||  |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| | || |||||| || ||| ||  |  ||||||||    
T  51120956 catcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaa 51120857  T
Q  111 ctgtctaatcttacaacatct 131  Q
     |||||||| |||||||||||    
T  51120856 gtgtctaatgttacaacatct 51120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 305
Target Start/End: Complemental strand, 514623 - 514494
Alignment:
Q  176 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattg 275  Q
    |||||||||  || |||||||| |||||||| |||| ||| ||| | | | ||||||||||||||| ||||||||||| |||| |||| || ||||||||    
T  514623 tcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattg 514524  T
Q  276 aggtcttacaacaaggtccatgaaagaatt 305  Q
    |||  | ||||||| |||||  ||||||||    
T  514523 agggttcacaacaaagtccaacaaagaatt 514494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 51764484 - 51764275
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaac-tacgagctaagttcaactgtctaatcttacaaca 128  Q
    ||||||||  ||||||||||| || |||| | ||||||||| |||||||||||||||| || ||| | || | || |||||| || ||||||||| ||||    
T  51764484 tgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcg-gataggttcaaatgcctaatcttagaaca 51764386  T
Q  129 tct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatg 225  Q
    |||   |||||||||||| | |||||     ||||||| | |||||  | | ||||||||||| ||||||||||||||||| |||| ||| ||| |||||    
T  51764385 tctccttaaaacttcacagacaccttta---gatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatg 51764289  T
Q  226 gtttcatctcttaa 239  Q
     ||||||| |||||    
T  51764288 ctttcatcacttaa 51764275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 1657306 - 1657346
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttca 70  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  1657306 tgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 27005831 - 27005791
Alignment:
Q  15 atcaatacttgtatgtgacaagttcaacacctccagtttgg 55  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  27005831 atcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 68  Q
    |||||||||| ||||  | ||||||||||| |||||||||||||| || |||||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 36811086 - 36811046
Alignment:
Q  15 atcaatacttgtatgtgacaagttcaacacctccagtttgg 55  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  36811086 atcaattcttgaatgggacaagttcaacacctccagtttgg 36811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 32785835 - 32785537
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||  || |||||||| || | |  |||  | | || ||    |  | || |||||    
T  32785835 catcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaaaagtggtccaaattcaa 32785736  T
Q  111 ctgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaa 210  Q
     |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| |||||||||||||  ||||| |||    
T  32785735 atgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaatagaa 32785636  T
Q  211 gaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaattagaa 309  Q
    ||||| ||  ||||| ||||||||||||| |   ||||| ||| ||||  |||  |||||||||||||  |||||||||  ||||| ||||||||||||    
T  32785635 gaaaacatcctgatgctttcatctcttaaccaataattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattagaa 32785537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 1037727 - 1037503
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgag-ctaagttca 109  Q
    ||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || || ||  || |||| ||||    
T  1037727 catcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaa-tagtaggctaaattca 1037629  T
Q  110 actgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaat 206  Q
    | ||||||| ||||||||||||   ||||||||||||||||||||| || ||||||  |  |||     |||||||||| | ||||||||||||||||||    
T  1037628 aatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaat 1037529  T
Q  207 cgaagaaaatattttgatggtttcat 232  Q
     |||| ||| | | ||||| ||||||    
T  1037528 ggaagcaaacaatatgatgttttcat 1037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 10614643 - 10614822
Alignment:
Q  25 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 124  Q
    |||| ||||||||||||||||||||| |||||||   ||| ||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||||    
T  10614643 gtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttac 10614742  T
Q  125 aacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaa 204  Q
    |||||   |||||||||| |||||||||||| |   ||| |  | |||||  | |||||||||||||||||||||||||||||    
T  10614743 aacatatccttaaaacttgacaaataccttcat---ataagagattgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 15092195 - 15091947
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| |||||  ||||||  | || ||||||||| ||| ||| |||| |||||    
T  15092195 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacat 15092096  T
Q  130 ---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatgg 226  Q
       |||||||||| | |||||||||     ||||||  |  ||||| |  ||||||||| || |  || ||||||||||| |||| || |||| |||||     
T  15092095 ttccttaaaacttgagaaataccttga---gatatgttatagcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatga 15091999  T
Q  227 tttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 278  Q
    ||||||| ||||| ||  ||||||||| |||| |||| ||||||||||||||    
T  15091998 tttcatcacttaaccggtaattgtgagccaaatagagagactttaattgagg 15091947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 6432197 - 6432341
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||  ||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||| || |   |||||||||||    
T  6432197 catcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaa 6432296  T
Q  111 ctgtctaatcttacaacat---cttaaaacttcacaaataccttc 152  Q
     ||| |||  |||||||||   |||||||||| ||||||||||||    
T  6432297 atgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 6426547 - 6426784
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||| ||||| | |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| ||||| ||| |||    ||||||||||||    
T  6426547 catcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaa 6426646  T
Q  111 ctgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatc 207  Q
     ||| ||| ||||||||||   |||||||||||||||||||||   || |||||  ||| ||||    |||||||||| || || ||||||||||||||     
T  6426647 atgtttaagcttacaacatttccttaaaacttcacaaatacct---tcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaatg 6426743  T
Q  208 gaagaaaatattttgatggtttcatctcttaagcgtgaatt 248  Q
    |||| | | ||| ||||| ||||||| ||||| | ||||||    
T  6426744 gaagcatacattatgatgatttcatcacttaaccatgaatt 6426784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 7119207 - 7119387
Alignment:
Q  25 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 124  Q
    |||| ||||||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | ||||||||||| ||| ||||||||     
T  7119207 gtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttag 7119306  T
Q  125 aacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaa 205  Q
    |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||||||||    
T  7119307 aacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaa 7119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 7131685 - 7131865
Alignment:
Q  25 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 124  Q
    |||| ||||||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | ||||||||||| ||| ||||||||     
T  7131685 gtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttag 7131784  T
Q  125 aacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaa 205  Q
    |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||||||||    
T  7131785 aacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaa 7131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 6394900 - 6395044
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaa 110  Q
    |||||||||  ||||||| ||||||||||||||||||||| | ||||| | ||||||||| |||| |||| ||||||||| |||    ||||||||||||    
T  6394900 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 6394999  T
Q  111 ctgtctaatcttacaacat---cttaaaacttcacaaataccttc 152  Q
     ||| ||| ||||||||||    ||||||||| ||||||||||||    
T  6395000 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 6416014 - 6416146
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||||| ||||||||||||||||||||| ||||||| | |||||| || |||| ||||||||||||||  || |   ||||||||||| || | ||||||    
T  6416014 ttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatctt 6416113  T
Q  123 acaacat---cttaaaacttcacaaataccttc 152  Q
    |||||||    ||||||||| ||||||||||||    
T  6416114 acaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 12102315 - 12102381
Alignment:
Q  24 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 90  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttcactttt 12102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 6589374 - 6589265
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||||| |||||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||||   ||     ||||||||||| || ||||||||    
T  6589374 ttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatctt 6589275  T
Q  123 acaacatctt 132  Q
    ||||||||||    
T  6589274 acaacatctt 6589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 6402910 - 6403040
Alignment:
Q  25 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 124  Q
    |||| ||||||||||||||| || |||| ||||| | ||||||| | |||||||||||||||| || |||  | || ||||||||| || ||||| ||||    
T  6402910 gtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttac 6403009  T
Q  125 aacat---cttaaaacttcacaaataccttc 152  Q
    |||||   |||||||||| ||||||||||||    
T  6403010 aacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 6410042 - 6410121
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 90  Q
    |||||||||  ||||||| |||| |||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||    
T  6410042 catcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactttt 6410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 11936319 - 11936220
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 11948299 - 11948200
Alignment:
Q  30 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 129  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11948200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 6423264 - 6423330
Alignment:
Q  22 cttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt 88  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||||||| | || ||||||||||||    
T  6423264 cttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcactt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 6594656 - 6594525
Alignment:
Q  24 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 123  Q
    ||||| |||||||| |||||||||||||||||||| |  |||||| | |||| ||||||||||| || |||  |  | ||||| ||| ||| ||||||||    
T  6594656 tgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatctta 6594557  T
Q  124 caacat---cttaaaacttcacaaataccttc 152  Q
     |||||   |||||||||| ||||||||||||    
T  6594556 taacatctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 19632495 - 19632611
Alignment:
Q  31 gacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatc 130  Q
    ||||||| ||||||||| || ||||||| |  |||||| | ||||||||| || ||| || |||  |||| ||||||||| ||  | |||||||||||||    
T  19632495 gacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatcttacaacatc 19632594  T
Q  131 ttaaaacttcacaaata 147  Q
    ||||||||| |||||||    
T  19632595 ttaaaacttgacaaata 19632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 6596991 - 6596916
Alignment:
Q  11 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 86  Q
    ||||||||| | |||||  ||||||||||||||||||||| | ||||||||||||||| | | ||||| |||||||    
T  6596991 catcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcac 6596916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 9411556 - 9411619
Alignment:
Q  176 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaa 239  Q
    ||||||||||||| ||||||||||||||||| |||| |||  |||||||| ||| |||||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaa 9411619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 6432363 - 6432464
Alignment:
Q  177 caaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattga 276  Q
    |||||||||  ||||||||||||||||||| |||| ||| ||| ||||  ||||||  ||||| | ||||||||||  |||| |||| |||||||| |||    
T  6432363 caaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactga 6432462  T
Q  277 gg 278  Q
    ||    
T  6432463 gg 6432464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 9411788 - 9411864
Alignment:
Q  405 ttcaaaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggtta 481  Q
    |||||||||||| |||||||| |||||||| || ||| ||  ||||| |||||||||| |||| ||||| |||||||    
T  9411788 ttcaaaataattagtaaaggacaaagacctcaaggttggtctctcacagagagcagaaacaatgccaactttggtta 9411864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 7994234 - 7994101
Alignment:
Q  22 cttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatct 121  Q
    ||||||| ||||| |||||||||||| || || |||| | ||||||||| ||| |||||||||||| ||  || |   |||| |||||| || || ||||    
T  7994234 cttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatct 7994135  T
Q  122 tacaacat---cttaaaacttcacaaataccttc 152  Q
    ||||||||   |||||||| | ||||||||||||    
T  7994134 tacaacatttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 9410751 - 9410814
Alignment:
Q  24 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 87  Q
    |||||||||||| |||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  9410751 tgtatgtgacaaattcaacacctccaacttgggagcttcaaagttcaatccaattaacttcact 9410814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 9411404 - 9411455
Alignment:
Q  24 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 75  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||| ||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaatcca 9411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 28935096 - 28935132
Alignment:
Q  22 cttgtatgtgacaagttcaacacctccagtttgggaa 58  Q
    |||||||||||||||||||||||||| |||| |||||    
T  28935096 cttgtatgtgacaagttcaacacctcgagttggggaa 28935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 41889605 - 41889391
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||||| ||| |||||||||||||||| |||||||| || |||||||| | |||||||||||||| || |||  |  | ||||||||| | |||||| ||    
T  41889605 ttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgtt 41889506  T
Q  123 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 219  Q
    |||||||   |||||||||| |  ||||||||| ||  |||||| ||  |||||  |||||||||| || |||||||| |||||||| |||| ||| |||    
T  41889505 acaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatggaagcaaacatt 41889406  T
Q  220 ttgatggtttcatct 234  Q
     |||||  |||||||    
T  41889405 atgatgtcttcatct 41889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 20478143 - 20478025
Alignment:
Q  13 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaact 112  Q
    ||||||| | |||||| ||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||| || ||  ||  | |||||||||||| |    
T  20478143 tcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaat 20478044  T
Q  113 gtctaatcttacaacatct 131  Q
    | || | ||||||||||||    
T  20478043 gccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 41901586 - 41901542
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 67  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  41901586 ttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 32267523 - 32267699
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||| |||||||||||||| ||||||| |||||||| ||||||||||| | |   ||| |||||| || |||   | | ||||||||| |||||||| ||    
T  32267523 ttgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgtt 32267619  T
Q  123 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 199  Q
    |||||||   ||||||| || |   |||||||| || ||||||| ||  |||||  ||||||||||||| ||||||||||    
T  32267620 acaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 41901510 - 41901398
Alignment:
Q  102 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 198  Q
    ||||||||| |||||||| ||||||||    |||||||||| |  ||||||||| ||  |||||| ||  |||||  ||||||||||||| |||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  199 gggaaaatcgaag 211  Q
    |||||||| ||||    
T  41901410 gggaaaatggaag 41901398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 314
Target Start/End: Original strand, 9581276 - 9581410
Alignment:
Q  180 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggt 279  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||||| | |  |||||||  ||||   || ||||||||||||||     
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgaggg 9581375  T
Q  280 cttacaacaaggtccatgaaagaattagaagtctc 314  Q
    |||||| |||  ||| ||||||| |||||| ||||    
T  9581376 cttacaccaatatccttgaaagacttagaattctc 9581410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 19468550 - 19468295
Alignment:
Q  23 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 122  Q
    |||||| |||||| |||||||||||||| ||||||| | ||||||||| ||||||||| |||||| || |||   | |||||||| || || ||||| ||    
T  19468550 ttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatatt 19468451  T
Q  123 acaaca---tcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 219  Q
    | ||||    |||||||||| |||||| |||   || ||||||    ||||     ||||||||||||| ||||||||||| ||||| |||| ||| |||    
T  19468450 agaacacctccttaaaacttgacaaatgcct---tccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacatt 19468354  T
Q  220 ttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 278  Q
     ||||| ||||||| ||||| | |||||| | || |||  ||||  |||||||||||||    
T  19468353 atgatgttttcatcgcttaaccatgaattctcagccaagtagagatactttaattgagg 19468295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 9586844 - 9586953
Alignment:
Q  180 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggt 279  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||||| | |  |||| ||  ||||   || ||||| |||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgaggt 9586943  T
Q  280 cttacaacaa 289  Q
    ||||||||||    
T  9586944 cttacaacaa 9586953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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