View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16759_high_3 (Length: 358)
Name: NF16759_high_3
Description: NF16759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16759_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 42854973 - 42854647
Alignment:
| Q |
17 |
aagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaat |
115 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42854973 |
aagaatgagaaagaataccatgatatatcttatgcacatattatattgtatctgagtcaaaaaacaaaggcaggtcgaacatccattgacagagagtaat |
42854874 |
T |
|
| Q |
116 |
ctaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42854873 |
ctaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcacaagttctaagttaagcaatatctatatagcggaa |
42854774 |
T |
|
| Q |
216 |
gacagagaaacggacctcaatgttgtcaagcaagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaaccgaataa |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42854773 |
gatgcagaaacggacctcaatgttgtcaagcaagtcacaaataccactgcaatgaacactacattttttacaatctgaataaaaaatttaaaccgaataa |
42854674 |
T |
|
| Q |
316 |
atggttatatcttagcctacatattca |
342 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
42854673 |
atggttatatcttagcctacatattca |
42854647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 317
Target Start/End: Complemental strand, 42848390 - 42848129
Alignment:
| Q |
50 |
catatattatattgtatctgagtcaaaaaacaaaa-------gcaggtcgaacatccattgacagagagtaatctaattgacttaaggacatatatactg |
142 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||| ||||| || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
42848390 |
catatattatattgtatcagagtcaaaaaaaaaaaaaacaaagcaggtggaacacccgtagacagagagtaatctaattgacttaaggacatatatactg |
42848291 |
T |
|
| Q |
143 |
cagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacctcaatgttgtc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |
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| T |
42848290 |
cagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcct---------- |
42848201 |
T |
|
| Q |
243 |
aagcaagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaaccgaataaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42848200 |
---caagtcacaaataccactgcaataaacactacattttttacaatctgaataaaaaatttaaactgaataaat |
42848129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 42856594 - 42856366
Alignment:
| Q |
40 |
atatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaagg----acata |
135 |
Q |
| |
|
|||||||| ||| ||||||||||||||| | |||| |||| |||| |||| ||||| || | || |||||||| ||||||||| || | | ||| |
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| T |
42856594 |
atatcttacgcacttattatattgtatctcaatcaagaaaccaaaggaggtggaacaataataggcaaagagtaatgtaattgactcaatgatatatata |
42856495 |
T |
|
| Q |
136 |
tatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacctcaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||| | ||||| |
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| T |
42856494 |
tatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaa |
42856395 |
T |
|
| Q |
236 |
tgttgtcaagcaagtcacaaataccactg |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
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|
| T |
42856394 |
tgttgtcaagcaagtcgtaaataccactg |
42856366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 42860564 - 42860433
Alignment:
| Q |
133 |
atatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacct |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||| | || |
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| T |
42860564 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42860465 |
T |
|
| Q |
233 |
caatgttgtcaagcaagtcacaaataccactg |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
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|
| T |
42860464 |
caatgttgtcaagcaagtcgtaaataccactg |
42860433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 42853084 - 42852768
Alignment:
| Q |
17 |
aagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtcaaaaaaca--aaagcaggtcgaacatccattgacagagagta |
113 |
Q |
| |
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|||||||| |||||||| | | |||||||||||||| ||||||||| |||||| || |||||| | |||||| || ||||| ||| |||||||| || |
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| T |
42853084 |
aagaatgaaaaagaataacgtgatatatcttatgcacatattatatcgtatcttcgtaaaaaaaaaccaaagcatgtggaacacacatagacagagatta |
42852985 |
T |
|
| Q |
114 |
atctaattgacttaag----gacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatata |
209 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| ||| |||| |||||||||||||||||||||||| | |||||| ||| ||||||||| ||||| | |
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|
| T |
42852984 |
atctaatcgacttaattcatgacatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactataca |
42852885 |
T |
|
| Q |
210 |
gcggaagacagagaaacggacctcaatgttgtcaagcaagtcacaaataccactgcaataaacactacat-tttttacaatctgaataaaaaatttaaac |
308 |
Q |
| |
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|| | ||| | ||||| | |||||||| |||||||||||| |||| | | | ||||||||||||| | | ||||||||| ||||||| ||||| |
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| T |
42852884 |
gcagcagaaaaagaaatgtgtctcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaaaaaaattaaaa |
42852785 |
T |
|
| Q |
309 |
cgaataaatggttatat |
325 |
Q |
| |
|
||| ||||||||||||| |
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| T |
42852784 |
cgattaaatggttatat |
42852768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 27200 - 27095
Alignment:
| Q |
17 |
aagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtc-aaaaaacaaaagcaggtcgaacatccattgacagagagtaa |
114 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| |||||| ||||||||| | | ||||||| ||||||||| ||||| || ||||| |||||| |
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|
| T |
27200 |
aagaatgaaaaagaataccacgatatatcttatgcacatattacattgtatctcggacaaaaaaaccaaagcaggtggaacactaatagacagtgagtaa |
27101 |
T |
|
| Q |
115 |
tctaat |
120 |
Q |
| |
|
|||||| |
|
|
| T |
27100 |
tctaat |
27095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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