View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16759_low_1 (Length: 793)
Name: NF16759_low_1
Description: NF16759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16759_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 416 - 604
Target Start/End: Original strand, 11688593 - 11688782
Alignment:
| Q |
416 |
gactttcaactttgtagtgagagaaagtgtttgagagtgtaccttatagaatgaaagtgaatctgatctttaaatctaaggtggtattgcttttgaagtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688593 |
gactttcaactttgtagtgagagaaagtgtttgagagtgtaccttatagaatgaaagtgaatctgatctttaaatctaaggtggtattgcttttgaagtt |
11688692 |
T |
|
| Q |
516 |
gaataggtgaaaaagaaagctttttcaaaacccactacacatttcat-aaggaaatgagaaagagaaaaatggtggctagctcagaaatt |
604 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688693 |
gaataggtgaaaaagaaagctctttcaaaacccactacacatttgataaaggaaatgagaaagagaaaaatggtggctagctcagaaatt |
11688782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 184 - 355
Target Start/End: Original strand, 11688358 - 11688529
Alignment:
| Q |
184 |
taatcaatgttttcaaccttttgaattatagtattaacaaaacaagaatagtcattgcaagtaatagttcttttaattgttgaaaaactcaagagtccaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688358 |
taatcaatgttttcaaccttttgaattatagtattaacaaaacaagaatagtcattgcaagtaatagttcttttaattgttgaaaaactcaagagtccaa |
11688457 |
T |
|
| Q |
284 |
ctactttgtttaattaataccatcctaagaaaattaatttagaaacataccaaaatgttggaattttcagct |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688458 |
ctactttgtttaattaataccatcctaagaaaattaatttagaaacataccaaaatgttggaattttcagct |
11688529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 11688191 - 11688322
Alignment:
| Q |
18 |
aaaataagcaagaccaaaatcatataaaaattaactaaataagcaaagttcaaatcaaggtatctaatctaaacataacttgagac-nnnnnnnncaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11688191 |
aaaataagcaagaccaaaatcatataaaaattaactaaataagcaaagttcaaatcaaggtatctaatctaaacataacttgagacaaaaaaaaacaaca |
11688290 |
T |
|
| Q |
117 |
taagactgataaagatgtgaaatagctacagt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11688291 |
taagactgataaagatgtgaaatagctacagt |
11688322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 666 - 789
Target Start/End: Original strand, 11688844 - 11688970
Alignment:
| Q |
666 |
catgggtcccacttaggcccccattgttaagatgttaatcatcttagtgtttgagttgttgc----ctatgctgtgcttcttctctaatatgttaataat |
761 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
11688844 |
catgggtcctacttaggcccccattgttaagatgttaatcatcttagtgtttgagttattgcctatctatgttgtgcttctgctctaatatgttaataa- |
11688942 |
T |
|
| Q |
762 |
tattcttgtgttgcttctctgctcctcc |
789 |
Q |
| |
|
|| |||||||||||||||||||| |||| |
|
|
| T |
11688943 |
taatcttgtgttgcttctctgctactcc |
11688970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University