View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16759_low_2 (Length: 594)
Name: NF16759_low_2
Description: NF16759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16759_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 83 - 577
Target Start/End: Complemental strand, 10048759 - 10048250
Alignment:
| Q |
83 |
gggaaccaaactaagtcttgtttaattccttctgtacaacttcagaaagatatgatctcctcacatggaccatacattaatgaaatctagtttgcaggc- |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10048759 |
gggaaccaaactaagtcttgtttaattccttctgtacaacttcagaaagatatgatcccctcacatggaccatacattaatgaaatctagtttgcaggcg |
10048660 |
T |
|
| Q |
182 |
--tttgtctccaccaattatttcccttt------------atactcctaatgaaatttctctttcttttattcttgttcttgatgatacatgcaaggtta |
267 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10048659 |
gctttgtgtccaccaattatttccctttctaaaataattaatactcctaatgaaatttctctttcttttattcttgttcttgatgatacatgcaaggtta |
10048560 |
T |
|
| Q |
268 |
ttatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgccc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10048559 |
ttatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgccc |
10048460 |
T |
|
| Q |
368 |
agctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttacta |
467 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10048459 |
agctgcaattgcagacataagtgagagttctcctgcaagaactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttacta |
10048360 |
T |
|
| Q |
468 |
gcacccttaacaccaagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcctccaactgtacccacctgcattattnnnnnnntattacata |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10048359 |
gcacccttaacaccaagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcctccaactgtacccacctgcattattaaaaaaatattacata |
10048260 |
T |
|
| Q |
568 |
aataaatcat |
577 |
Q |
| |
|
|||||||||| |
|
|
| T |
10048259 |
aataaatcat |
10048250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 244 - 543
Target Start/End: Original strand, 10872383 - 10872676
Alignment:
| Q |
244 |
ttcttgatgatacatgcaaggttattatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtattt |
343 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
10872383 |
ttcttgatgatacatgcatggttatt---tacctcacaattgtggtattgtc---tcatgaagcaactttggtgacatctttattcgatctgttgtattt |
10872476 |
T |
|
| Q |
344 |
catgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaa |
443 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| |
|
|
| T |
10872477 |
catgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgcctggaa |
10872576 |
T |
|
| Q |
444 |
tttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
543 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||||||| | |||||||||||| || ||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
10872577 |
tttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacct |
10872676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 244 - 543
Target Start/End: Original strand, 10877454 - 10877747
Alignment:
| Q |
244 |
ttcttgatgatacatgcaaggttattatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtattt |
343 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
10877454 |
ttcttgatgatacatgcatggttatt---tacctcacaattgtggtattgtc---tcatgaagcaactttggtgacatctttattcgatctgttgtattt |
10877547 |
T |
|
| Q |
344 |
catgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaa |
443 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| |
|
|
| T |
10877548 |
catgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgcctggaa |
10877647 |
T |
|
| Q |
444 |
tttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
543 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||||||| | |||||||||||| || ||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
10877648 |
tttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacct |
10877747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 244 - 543
Target Start/End: Original strand, 10882525 - 10882818
Alignment:
| Q |
244 |
ttcttgatgatacatgcaaggttattatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtattt |
343 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
10882525 |
ttcttgatgatacatgcatggttatt---tacctcacaattgtggtattgtc---tcatgaagcaactttggtgacatctttattcgatctgttgtattt |
10882618 |
T |
|
| Q |
344 |
catgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaa |
443 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| |
|
|
| T |
10882619 |
catgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgcctggaa |
10882718 |
T |
|
| Q |
444 |
tttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
543 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||||||| | |||||||||||| || ||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
10882719 |
tttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacct |
10882818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 298 - 551
Target Start/End: Complemental strand, 39677575 - 39677322
Alignment:
| Q |
298 |
ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctc |
397 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
39677575 |
ctcatgaagcaactttggtgacatctttattagatctgttgtatttcatgtggcttttaacaagttgaccagctgcaattgcagacatgagtgaaagctc |
39677476 |
T |
|
| Q |
398 |
tcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaa |
497 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||| | |||| |
|
|
| T |
39677475 |
tcctgcaaggactgaaccagctactatagttgccaattgcctagagtttgctcctggactctctttactagctcccttaactccaagtaaattaagacaa |
39677376 |
T |
|
| Q |
498 |
gctgattgtgatgcaagctgtgtgcctcctccaactgtacccacctgcattatt |
551 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
39677375 |
gctgattgagatgcaagttgtgtaccccctccaactgtacccacctgcattatt |
39677322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 298 - 543
Target Start/End: Original strand, 10886488 - 10886733
Alignment:
| Q |
298 |
ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctc |
397 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10886488 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
10886587 |
T |
|
| Q |
398 |
tcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaa |
497 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |||| |
|
|
| T |
10886588 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10886687 |
T |
|
| Q |
498 |
gctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
543 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
10886688 |
gctgattgcgacgcaagttgtgtgccccctcctactgtacccacct |
10886733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 298 - 543
Target Start/End: Complemental strand, 10867881 - 10867636
Alignment:
| Q |
298 |
ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctc |
397 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10867881 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
10867782 |
T |
|
| Q |
398 |
tcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaa |
497 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |||| |
|
|
| T |
10867781 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10867682 |
T |
|
| Q |
498 |
gctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
543 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
10867681 |
gctgattgcgacgcaagttgtgtgccccctcctactgtgcccacct |
10867636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 327 - 543
Target Start/End: Original strand, 30707490 - 30707706
Alignment:
| Q |
327 |
ctagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatag |
426 |
Q |
| |
|
|||||||| || ||||||||||| ||||| || || || |||||||||||||||||||| ||||| ||||| || ||||| || ||||| ||||| || | |
|
|
| T |
30707490 |
ctagatctgttatatttcatgtgactcttaactagttgtccagctgcaattgcagacatgagtgatagctcgccggcaagtaccgaaccagctacgatgg |
30707589 |
T |
|
| Q |
427 |
ttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcc |
526 |
Q |
| |
|
| |||||| |||||| |||||| ||||||| |||| | | || |||||||||||||||||||| | ||||||||| || |||||||| ||||| || || |
|
|
| T |
30707590 |
tggccaatagcctagcatttgcacctggagattctgtgttggcgcccttaacaccaagtaaattaagacaagctgactgagatgcaagttgtgttccccc |
30707689 |
T |
|
| Q |
527 |
tccaactgtacccacct |
543 |
Q |
| |
|
||| || ||||| |||| |
|
|
| T |
30707690 |
tcccacagtaccaacct |
30707706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University