View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16759_low_4 (Length: 284)
Name: NF16759_low_4
Description: NF16759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16759_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 57 - 277
Target Start/End: Original strand, 53251149 - 53251369
Alignment:
| Q |
57 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251149 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
53251248 |
T |
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| Q |
157 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251249 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
53251348 |
T |
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| Q |
257 |
ccaaggtttctccttcatctc |
277 |
Q |
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|||||||||||||||| |||| |
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| T |
53251349 |
ccaaggtttctccttcttctc |
53251369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 57 - 278
Target Start/End: Original strand, 53236731 - 53236952
Alignment:
| Q |
57 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
156 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53236731 |
gctggtttccttttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggagaacagttttagttgctttcattatttcttcaacagatc |
53236830 |
T |
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| Q |
157 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
53236831 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcaatctcttctttagt |
53236930 |
T |
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| Q |
257 |
ccaaggtttctccttcatctct |
278 |
Q |
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|||||||||||||||| ||||| |
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| T |
53236931 |
ccaaggtttctccttcttctct |
53236952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 53251039 - 53251077
Alignment:
| Q |
19 |
gtactgttgttgttttggcagcaccattttcagttgttg |
57 |
Q |
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| T |
53251039 |
gtactgttgttgttttggcagcaccattttcagttgttg |
53251077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 60 - 278
Target Start/End: Original strand, 44740818 - 44741036
Alignment:
| Q |
60 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatcttc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
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| T |
44740818 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggagaagaacggttttagttgctttcattatttcttcaacagatcttc |
44740917 |
T |
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| Q |
160 |
cagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagtcca |
259 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44740918 |
cagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcgatctcttctttagtcca |
44741017 |
T |
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| Q |
260 |
aggtttctccttcatctct |
278 |
Q |
| |
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||||||||||||| ||||| |
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| T |
44741018 |
aggtttctccttcttctct |
44741036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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