View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16759_low_6 (Length: 218)
Name: NF16759_low_6
Description: NF16759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16759_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2361850 - 2362041
Alignment:
| Q |
15 |
aagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgc |
114 |
Q |
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| T |
2361850 |
aagcaatggtttactcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcgaacgaggaagaagcgc |
2361949 |
T |
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| Q |
115 |
aaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgatttt |
206 |
Q |
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| T |
2361950 |
aaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgatttt |
2362041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 2366448 - 2366648
Alignment:
| Q |
9 |
gagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacgatattttggtg---ctacgaatgcggcgaacgagg |
105 |
Q |
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| T |
2366448 |
gagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcatcctacgaatgtgatcaacgagg |
2366547 |
T |
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| Q |
106 |
aagaagcgcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgattt |
205 |
Q |
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| T |
2366548 |
aagaagggcaaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggagatgccattcctttactaaaatggtttgattt |
2366647 |
T |
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| Q |
206 |
t |
206 |
Q |
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| T |
2366648 |
t |
2366648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 2356179 - 2356239
Alignment:
| Q |
33 |
ttgagtttcaatattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
93 |
Q |
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| T |
2356179 |
ttgaatttcaacattgtacttccgatgattgttgggaagcgatattttggtgctatgaatg |
2356239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 41341755 - 41341949
Alignment:
| Q |
13 |
tgaagcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagc |
112 |
Q |
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| T |
41341755 |
tgaaacaatgttttactcaattgagtaaaaacattgttcttccaatgttggttgggaagcgatattttggagctacgaatgtggttgacaaggaagaaga |
41341854 |
T |
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| Q |
113 |
gcaaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgc-cattccttttctaaaatggtttgatttt |
206 |
Q |
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| T |
41341855 |
acaaaaatgtatgaaagctttggaagagatgttacgtttgttaggggtgttcacggtgggtggtgctcttcccttttctaaaatggtttgatttt |
41341949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 4303719 - 4303806
Alignment:
| Q |
119 |
atgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggagatgccattccttttctaaaatggtttgatttt |
206 |
Q |
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| T |
4303719 |
atgtgtaaaagctataaaagagatgctgcgtttgatgggggtgttcacagtgggagatgctcttccttttttaaaatggtttgatttt |
4303806 |
T |
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