View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16760_high_1 (Length: 540)
Name: NF16760_high_1
Description: NF16760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16760_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 23061709 - 23061357
Alignment:
| Q |
18 |
aaggaaagctatacaggtaaaggttcaaggaagaaaaccataaatctaaactataaatacttaatttatgttaaaactaatattaacgacgacaatactc |
117 |
Q |
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| T |
23061709 |
aaggaaagctatccaggtaaaggttcaaggaagaaaaccataaatctaaactataaatacttaatttatgttaaaattaatattaacgacgacaatactc |
23061610 |
T |
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| Q |
118 |
tcttttctaaaaggtttgtgtttaaacgaatcaaaccaaaaagagtacctggctatgtctgattcgtttcaaaaccaaactgaatcgacttaaaccaatt |
217 |
Q |
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| T |
23061609 |
tcttttctaaaaggtttatgtttaaacgaatcaaaccaaaaagagtacccggctatgtctggttcgtttcaaaaccaaactgaatcgacttaaaccaatt |
23061510 |
T |
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| Q |
218 |
tggttaggttcgaccttcgggtttttggttttaatatccaaagaacaaacgtaccaaaacaatgttaatcacacacccttttactaatatcatccatcct |
317 |
Q |
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| T |
23061509 |
tggttacgttcgactttcgggtttttggttttaatatccaaataacaaatgtaccaaaacaatgttaatcacacccccttttactaatatcattcatcct |
23061410 |
T |
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| Q |
318 |
cacgcacacttaagattagacccaacattaaaacccaacataaaattctcccta |
371 |
Q |
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| T |
23061409 |
cacgcacacttaagattagacccaacattaaaa-ccaacataaaattctcccta |
23061357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 505
Target Start/End: Complemental strand, 23061302 - 23061223
Alignment:
| Q |
426 |
ctcaaactaacttcatttatttcattgatctctttgactcaagttctccatcccttctgcgcatgaccttcgtctatcac |
505 |
Q |
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| T |
23061302 |
ctcaaactaacttcccatatttcattgatctctttgactgaagttctccgtcccttctgcacatgaccttcgtccatcac |
23061223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 7202731 - 7202665
Alignment:
| Q |
296 |
ttttactaatatcatccatcctcacgcacacttaagattagacccaacattaaaacccaacataaaat |
363 |
Q |
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| T |
7202731 |
ttttactaatatcatcc-tcctcacacaaagttgaggttagacccaacattaaaacccgacataaaat |
7202665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 7235925 - 7235870
Alignment:
| Q |
296 |
ttttactaatatcatccatcctcacgcacacttaagattagacccaacattaaaac |
351 |
Q |
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| T |
7235925 |
ttttactaatatcattcctcctcacacaaacttgaggttagacccaacattaaaac |
7235870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 49884580 - 49884520
Alignment:
| Q |
297 |
tttactaatatcatccatcctcacgcacacttaagattagacccaacattaaaacccaaca |
357 |
Q |
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| T |
49884580 |
tttactaatatcatccctcctcacatacaagtaagattaggcccagcattaaaatccaaca |
49884520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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