View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16760_low_2 (Length: 378)
Name: NF16760_low_2
Description: NF16760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16760_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 47280768 - 47281129
Alignment:
| Q |
1 |
cacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47280768 |
cacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacgggca |
47280867 |
T |
|
| Q |
101 |
ccgtgggaaattgccttcatcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280868 |
ccgtgggaaattgccttcatcaccagctccgtttcaccatgtgcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatata |
47280967 |
T |
|
| Q |
201 |
aataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47280968 |
aataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatccccccaacttacttatgacaggaagatccatttca |
47281067 |
T |
|
| Q |
301 |
agtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattac |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281068 |
agtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattac |
47281129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 29 - 362
Target Start/End: Original strand, 47275111 - 47275451
Alignment:
| Q |
29 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttcatcaccagct |
128 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||| |||| |
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| T |
47275111 |
ttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatcactagct |
47275210 |
T |
|
| Q |
129 |
ccgtttcaccatgagcagacaacactgaaatcaaacaattta---taac--aacaatcattgattaataattatataaataaatgagagtgaaaatgaag |
223 |
Q |
| |
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| | || | | |||||||||||||||| |||||| | | || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47275211 |
cattatcgctagattcagacaacactgaaataaaacaacaaacgttcaccaaacaatcattgattaataattatatgaataaatgagagtgaaaatgaag |
47275310 |
T |
|
| Q |
224 |
aaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttactt---atgacaggaagatccatttcaagtcctacaagttccagcag |
320 |
Q |
| |
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||||| | |||||||||||| ||||| |||| | ||||||||| ||| |||||||| | ||| ||||| ||| | |||||| | |||||||| ||||| |
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| T |
47275311 |
aaacaaagcaaagatgaagaactgaagattacagaacagatcc-ccccacttacttacgacgaccggaaggtccgtctcaagttccacaagttcaagcag |
47275409 |
T |
|
| Q |
321 |
cttgagtccatccatgtcaggcatgtgaacttcagcgattac |
362 |
Q |
| |
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||| ||||||||||||||||||| ||| || ||||||||||| |
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| T |
47275410 |
cttaagtccatccatgtcaggcaggtgcacatcagcgattac |
47275451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 49060903 - 49061240
Alignment:
| Q |
20 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttca |
119 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| | |||| |
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| T |
49060903 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttca |
49061002 |
T |
|
| Q |
120 |
tcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaa-----tcattgattaataattatataaataaatgagagtg |
214 |
Q |
| |
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||||||||| || ||||||| ||||||||||||||||||||||| ||||||| | ||| |||||||||| || | ||| |||||| | ||| |
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| T |
49061003 |
tcaccagctttgtatcaccatatgcagacaacactgaaatcaaacattttataaaaccaaaagtatcattgattagtagtcgtatcaataaacaatagtc |
49061102 |
T |
|
| Q |
215 |
aaaatgaagaaacagaacaa--------agatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttcaagtcct |
306 |
Q |
| |
|
|||||||| ||| |||| || | || || ||| || |||| | |||||||| | ||||||||||||| ||||| |||||||||||||| |
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| T |
49061103 |
aaaatgaataaatagaaaaagaagaaaaaaattaacagccaaagattacatgacagatcccc---acttacttatgacgggaaggtccatttcaagtccc |
49061199 |
T |
|
| Q |
307 |
acaagttccagcagcttgagtccatccatgtcaggcatgtg |
347 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||||||| |
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| T |
49061200 |
acaagttcaagcagcttaaatccatccatgtccggcatgtg |
49061240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 2893425 - 2893287
Alignment:
| Q |
35 |
attacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttcatcaccagctccgttt |
134 |
Q |
| |
|
|||||||||||||||||| || || ||| | || ||| ||||||||||||||| ||||||| |||||||| |||| | |||||||||| || || | |
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| T |
2893425 |
attacatgctgccaaatgatctgtacctctttcagtctaacaggtttcagcagataatcacaagcaccgtgttcaattcctttcatcaccatcttcggat |
2893326 |
T |
|
| Q |
135 |
caccatgagcagacaacactgaaatcaaacaatttataa |
173 |
Q |
| |
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|| ||| ||||| ||||||||||||||||| ||||||| |
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| T |
2893325 |
catcattcgcagaaaacactgaaatcaaacactttataa |
2893287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 2888633 - 2888554
Alignment:
| Q |
271 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
350 |
Q |
| |
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||||||||||||||||| | |||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
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| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2888554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 2904736 - 2904657
Alignment:
| Q |
271 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
350 |
Q |
| |
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|||||||| |||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
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| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2904657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 34316118 - 34316047
Alignment:
| Q |
275 |
tacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
346 |
Q |
| |
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|||| ||||||||||||||||| |||||||| ||| |||| || || |||| ||||||||||||||||||| |
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| T |
34316118 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
34316047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 48870446 - 48870525
Alignment:
| Q |
271 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
350 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
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|
| T |
48870446 |
aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
48870525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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