View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16760_low_3 (Length: 366)
Name: NF16760_low_3
Description: NF16760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16760_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 50654636 - 50654274
Alignment:
| Q |
1 |
tttttatgttattattatcatgggttgcaacttttctggttgtgctgaacaataattgattttacacttgagtagaaaacaagataagtcagtggcgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50654636 |
tttttatgttattattatcatgggtcgcaacttttctggttgtgctgaacaataattgattttacacttgagtagaaaacaagataagtcagtggcgtaa |
50654537 |
T |
|
| Q |
101 |
attgaaggtgaagacatcataacaaggaaggtttagcagggaaagagttaaacaaggagggattgggtgagggaagacttatgtgctactcttaattttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50654536 |
attgaaggtgaagacatcataacaaggaaggtttagcagggaaagagttaaacaaggagggattgggtgagggaagacttatgtgctactcttaattttt |
50654437 |
T |
|
| Q |
201 |
taatatatctgaaccctttaattattttaatagatccaatagtacactggtgaggaacttgatggctctctcaccttagaagccaccaagtttataacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50654436 |
taatatatctgaaccctttaattattttaatagatccaatggtacactggtgaggaacttgatggctctctcacctt-tctgccaccaagtttataacct |
50654338 |
T |
|
| Q |
301 |
atgttattccattctctcatcctatacnnnnnnngactggggtagaagggtgatgatgtccatc |
364 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
50654337 |
atgttattccattctctcatcctatactttttttgactggggtagaagggtgatgatgttcatc |
50654274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University