View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16761_low_1 (Length: 508)
Name: NF16761_low_1
Description: NF16761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16761_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 898144 - 898639
Alignment:
| Q |
1 |
gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata |
100 |
Q |
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| T |
898144 |
gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata |
898243 |
T |
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| Q |
101 |
gttgatattctcttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacc |
200 |
Q |
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| T |
898244 |
gttgatattctgttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacc |
898343 |
T |
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| Q |
201 |
tttgtccagatttcaatcccaatagagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaaggtcggttttacctgaattttga |
300 |
Q |
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| T |
898344 |
tttgtccagatttcaatcccaatagagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaaggtcggttttacctgaattttga |
898443 |
T |
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| Q |
301 |
catagagaggtgccaataccacccccatctcttgatctcaaatttggtgccttcattggcctaaaataattatgcacatactctgtctcttctgaatcat |
400 |
Q |
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| T |
898444 |
cat--agaggtgccaataccacccccatctcttgatctcaaatttggtgccttcattggcctaaaataattatgcacatactctgtctcttctgaatcat |
898541 |
T |
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| Q |
401 |
tgaaaccttggtcctactagcctatgttcttagtgctcttcccccaagaaaacctttctccaatgcattaaagtttacacaacatctcgtctttgatg |
498 |
Q |
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| T |
898542 |
tgaaaccttggtcctactagcctatgttcttagtgctcttcccccaagaaaacctttctccaatgcattaaagtttacacaacatctcgtctttgatg |
898639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 1194549 - 1194609
Alignment:
| Q |
4 |
acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta |
64 |
Q |
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| T |
1194549 |
acattcaaaaagttttccaatgcactagtcagggtaaattttgatgatccctcttttgcta |
1194609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 1183793 - 1183853
Alignment:
| Q |
4 |
acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta |
64 |
Q |
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| T |
1183793 |
acattcaaaaagttttccaatgcattagtcaggttaaattttcatgatccctcttttgcta |
1183853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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