View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16761_low_4 (Length: 294)
Name: NF16761_low_4
Description: NF16761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16761_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 12643961 - 12643696
Alignment:
| Q |
14 |
ttcttcttctcaatagaacaattttattcaacatgaaataattcaaagggacgttggactcggacttcagcaaccggtaagcctctttgacagagaattc |
113 |
Q |
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| T |
12643961 |
ttcttcttctcaatagaacaattttattcaacataaaataattcaaagggacgttggactcggacttcagcaacaggtaagcctctttgacagagaattc |
12643862 |
T |
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| Q |
114 |
acaatcatgattatttctcaaagt-cacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaacaatcttccat |
212 |
Q |
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| T |
12643861 |
acaatcatgattttttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaacaatcttccat |
12643762 |
T |
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| Q |
213 |
tgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcgcctatttatt |
278 |
Q |
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| T |
12643761 |
tgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcacctatttatt |
12643696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 5734872 - 5734610
Alignment:
| Q |
13 |
attcttcttctcaatagaacaattttattcaacatgaaataattcaaagggacgttggactcggacttcagcaaccggtaagcctctttgacagagaatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||| |
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| T |
5734872 |
attcttcttctcaatagaacaattttattcaacatgaaataattcaaagggatgttggactcggacttcagcaaccggtaagtct-tttg---gagaatt |
5734777 |
T |
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| Q |
113 |
cacaatcatgattatttctcaaagt-cacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacactatgcaaacaacaatcttcca |
211 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5734776 |
cacaatcatgattatttctccaagttcacctatctaacgtgttttccagcaaattaatgctatcaatcaacaagaacaccatgcaaacaacaatcttcca |
5734677 |
T |
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| Q |
212 |
ttgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcgcctatttatt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5734676 |
ttgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcacctatttatt |
5734610 |
T |
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