View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16762_high_4 (Length: 294)

Name: NF16762_high_4
Description: NF16762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16762_high_4
NF16762_high_4
[»] chr2 (7 HSPs)
chr2 (19-281)||(20000108-20000370)
chr2 (19-191)||(20018911-20019080)
chr2 (22-190)||(20028904-20029069)
chr2 (196-273)||(20019108-20019185)
chr2 (200-281)||(20029172-20029251)
chr2 (85-191)||(20009503-20009609)
chr2 (189-281)||(20009701-20009791)
[»] chr1 (2 HSPs)
chr1 (22-185)||(12573376-12573530)
chr1 (189-273)||(12573192-12573277)
[»] chr8 (1 HSPs)
chr8 (121-191)||(19000216-19000286)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 20000108 - 20000370
Alignment:
Q  19 tcattctgaacattcaaattattgatcaaaataaaacaagaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20000108 tcattctgaacattcaaattattgatcaaaataaaacatgaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaatt 20000207  T
Q  119 atgttagatttctgcttcttacttaaaggagaatcctgccacagaaaggatgtaattagacttttttgccgaacacgttatattcatcaaccacatattt 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20000208 atgttagatttctgcttcttacttaaaggagaatcctgtcacagaaaggatgtaattagacttttttgccgaacacgttatattcatcaaccacatattt 20000307  T
Q  219 atgtaaaaattaatcgataaacatactttgttactgtcatcttgatctccatctgttcatctc 281  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20000308 atgtaaaaaataatcgataaacatactttgttactgtcatcttgatctccatctgttgatctc 20000370  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 20018911 - 20019080
Alignment:
Q  19 tcattctgaacattcaaattattgatcaaaataaaacaagaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaatt 118  Q
    ||||||| ||||||||||||||  ||||  |||| ||| ||| |||||||||| ||||| |||||||  || ||||||| | ||||||||||||| |||     
T  20018911 tcattcttaacattcaaattataaatcatgataatacatgaaattttattataagatag-caaaaga--aatatccatatttttaccatcctcagtaatc 20019007  T
Q  119 atgttagatttctgcttcttacttaaaggagaatcctgccacagaaaggatgtaattagacttttttgccgaa 191  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  20019008 atgttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttaattagacttttttgccgaa 20019080  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 20028904 - 20029069
Alignment:
Q  22 ttctgaacattcaaattattgatcaaaataaaacaagaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaattatg 121  Q
    |||||||| |||||||||| ||| |||| ||| || ||||| |||||||| |||| ||||||||  |||||||||||||||||||||  ||  ||| |||    
T  20028904 ttctgaaccttcaaattatagataaaaa-aaagcatgaattcttattataagataatcaaaaga--aaaatccataatcttaccatcaccaataataatg 20029000  T
Q  122 ttagatttctgcttcttacttaaaggagaatcctgccacagaaaggatgtaattagacttttttgccga 190  Q
    |||||| |||||||| ||||| ||||||| |||||||| |||||||||||||||| || ||||| ||||    
T  20029001 ttagatctctgcttcatacttgaaggagagtcctgccaaagaaaggatgtaattaaacattttttccga 20029069  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 20019108 - 20019185
Alignment:
Q  196 ttatattcatcaaccacatatttatgtaaaaattaatcgataaacatactttgttactgtcatcttgatctccatctg 273  Q
    |||||||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20019108 ttatattcataaaccaaatatttatataaaaactaatcgataaacatactttgttactgtcatcttgatctccatctg 20019185  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 20029172 - 20029251
Alignment:
Q  200 attcatcaaccacatatttatgtaaaaattaatcgataaacatactttgttactgtcatcttgatctccatctgttcatctc 281  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  20029172 attcatcaaccacat--ttatataaaaattaatcgataaacatactttgttactatcatcttgatctccatctgttgatctc 20029251  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 20009503 - 20009609
Alignment:
Q  85 agaaaaatccataatcttaccatcctcagaaattatgttagatttctgcttcttacttaaaggagaatcctgccacagaaaggatgtaattagacttttt 184  Q
    ||||||||| ||||||||||||||  ||  ||| ||||||||| | | |||| |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  20009503 agaaaaatcgataatcttaccatcaccaataatcatgttagatcttttcttcatacttaaaggagaatcctgctaaagaaaggatgtaattagacatttt 20009602  T
Q  185 tgccgaa 191  Q
    || ||||    
T  20009603 tgtcgaa 20009609  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 20009701 - 20009791
Alignment:
Q  189 gaacacgttatattcatcaaccacatatttatgtaaaaattaatcgataaacatactttgttactgtcatcttgatctccatctgttcatctc 281  Q
    |||||| ||| ||||||||||||||| | ||||  |||||| |||||||||||||||| |||||| |||||||||||| ||| |||| |||||    
T  20009701 gaacacattacattcatcaaccacatttatatg--aaaatttatcgataaacatacttcgttactatcatcttgatctgcatttgttgatctc 20009791  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 12573530 - 12573376
Alignment:
Q  22 ttctgaacattcaaattattgatcaaaataaaacaagaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaattatg 121  Q
    ||||||||||||||||||| ||||| ||||||| | |||||||||| ||| |||| |||||||| |||         ||||||||||| ||| ||| |||    
T  12573530 ttctgaacattcaaattatagatcataataaaaaatgaatttttatcataagataatcaaaagaaaaa---------tcttaccatccgcagtaatcatg 12573440  T
Q  122 ttagatttctgcttcttacttaaaggagaatcctgccacagaaaggatgtaattagactttttt 185  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  12573439 ttagatttatgcttcttagttaaaggagaattctgccacagaaaggatgtaattagactttttt 12573376  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 12573277 - 12573192
Alignment:
Q  189 gaacacgttatattcatcaaccacatatttatgtaaaaa-ttaatcgataaacatactttgttactgtcatcttgatctccatctg 273  Q
    |||||||||| |||||||| |||||| ||||| |||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  12573277 gaacacgttacattcatcacccacatttttatataaaaaattaaacgatcaacatactttgttactgtcatcttgatctctatctg 12573192  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 19000286 - 19000216
Alignment:
Q  121 gttagatttctgcttcttacttaaaggagaatcctgccacagaaaggatgtaattagacttttttgccgaa 191  Q
    |||||||||  | ||||| ||| ||||| |||||||||||| ||| ||| |||||||||||||||||||||    
T  19000286 gttagattttagattctttcttgaaggaaaatcctgccacaaaaatgatataattagacttttttgccgaa 19000216  T

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