View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16762_low_1 (Length: 544)
Name: NF16762_low_1
Description: NF16762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16762_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 278 - 537
Target Start/End: Original strand, 15474988 - 15475247
Alignment:
| Q |
278 |
agagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacagtgta |
377 |
Q |
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| T |
15474988 |
agagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacagtgta |
15475087 |
T |
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| Q |
378 |
atgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattggattagtggactaatgtgtccttgtgctgggtatggaatcact |
477 |
Q |
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| T |
15475088 |
atgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattggattagtggactaatgtgtccttgtgctgggtatggaatcact |
15475187 |
T |
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| Q |
478 |
aagacatgaacattgttgttgtagttttgcctctgtaccaccatgtttgttttctctctg |
537 |
Q |
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| T |
15475188 |
aagacatgaacattgttgttgtagttttgcctctgtaccaccatgtttgttttctctctg |
15475247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 15474728 - 15474909
Alignment:
| Q |
18 |
aggaagaccaggtacaatcaaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtg |
117 |
Q |
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| T |
15474728 |
aggaagaccaggtacaatcaaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtg |
15474827 |
T |
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| Q |
118 |
aaaaaagcagcaccataaatccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtga |
199 |
Q |
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| T |
15474828 |
aaaaaagcagcaccataaatccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtga |
15474909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 278 - 499
Target Start/End: Original strand, 15467437 - 15467658
Alignment:
| Q |
278 |
agagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacagtgta |
377 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||| ||||||||| |
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| T |
15467437 |
agagttcaacattgttggcttgtgtaaaaccggattcgtcgaacccatcagagattggttcgacggatacgtttggtgcggttatggattgaacagtgta |
15467536 |
T |
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| Q |
378 |
atgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattggattagtggactaatgtgtccttgtgctgggtatggaatcact |
477 |
Q |
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| T |
15467537 |
atgtgttgttgcaaatgttgttttgatgccttttgaaaccaatcgttttgagaattggattagtggactaatgtgtccttgtgctggatatgggatcact |
15467636 |
T |
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| Q |
478 |
aagacatgaacattgttgttgt |
499 |
Q |
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| T |
15467637 |
aacacatgaacgttgttgttgt |
15467658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 15467177 - 15467358
Alignment:
| Q |
18 |
aggaagaccaggtacaatcaaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtg |
117 |
Q |
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||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
15467177 |
aggaagatcaggtacaaccaaaggcaattcatcaacaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtg |
15467276 |
T |
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| Q |
118 |
aaaaaagcagcaccataaatccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtga |
199 |
Q |
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| T |
15467277 |
aaaaaagcagcaccataaataccatgttgtttagcaacatcaagtgcccaaggtagaaaagaatcatagacaatgcatgtga |
15467358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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