View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16762_low_2 (Length: 427)
Name: NF16762_low_2
Description: NF16762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16762_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 32 - 411
Target Start/End: Original strand, 44683631 - 44684010
Alignment:
| Q |
32 |
ccattacttttgatccaaaacagtactgtactcaactaatgggaaagaataaaccaattttatttggttagtctatgaactgatctcatcactcacaatt |
131 |
Q |
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| T |
44683631 |
ccattacttttgatccaaaacagtactgtactcaactaatgggaaagaataaaccaattttatttggttagtctatgaactgatctcattactcacaatt |
44683730 |
T |
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| Q |
132 |
aaaacctagtacatgatattaagtgacctactgtaggtctacattttgctccttttgaatcctgatgttttcttactcaatttactctacattttgttgt |
231 |
Q |
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| T |
44683731 |
aaaatctagtacatgaaattaagtgacctactgtaggtctacatgttgctccttttcaatcctgatgttttcttactcaatttagtctacattttgttgt |
44683830 |
T |
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| Q |
232 |
ttgcctatcccaaaatattcattgttggtgtatgaaaaactttcattcatcacattgtaatacttaatacatttaacagtaaaaagggaagagaaccacc |
331 |
Q |
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| T |
44683831 |
tggcatatcccaaaatattcattgttggtgtatgaaaaactttcattcatcacatggtaatactacatacaataaacagtaaaaagggaagagaaccacc |
44683930 |
T |
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| Q |
332 |
cctcaaccgaatgcaatggacaagctatgatactatactaagaatttatattatgcctaatgtaaagtgcctctacttaa |
411 |
Q |
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| T |
44683931 |
cctcaaccgaatgcaatggacaagctatgatactatactaagaatttatattatgcctaatgtaaagtgcctctacttaa |
44684010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 20245 - 20157
Alignment:
| Q |
49 |
aaacagtactgtactcaactaatgggaaagaataaaccaattttatttggtt-agtctatgaactgatctcatcactcacaattaaaac |
136 |
Q |
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| T |
20245 |
aaacagtactgtattcaactaattggaaagaataaaccaattttattttgttgagtctacgaactgatctcattactcagaattaaaac |
20157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 16430263 - 16430175
Alignment:
| Q |
49 |
aaacagtactgtactcaactaatgggaaagaataaaccaattttatttggtt-agtctatgaactgatctcatcactcacaattaaaac |
136 |
Q |
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| T |
16430263 |
aaacagtactgtattcaactaattggaaagaataaaccaattttattttgttgagtctacgaactgatctcattactcagaattaaaac |
16430175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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