View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16762_low_3 (Length: 374)
Name: NF16762_low_3
Description: NF16762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16762_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 45512931 - 45512556
Alignment:
| Q |
1 |
tcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgtcgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagc |
100 |
Q |
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| T |
45512931 |
tcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgccgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagc |
45512832 |
T |
|
| Q |
101 |
tgagatcaaggaattgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccat |
200 |
Q |
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| T |
45512831 |
tgagatcaaggaatcgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccat |
45512732 |
T |
|
| Q |
201 |
ggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacattt |
300 |
Q |
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| T |
45512731 |
ggaacccaagaacataggaattggactcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacattt |
45512632 |
T |
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| Q |
301 |
ggagcaactattggtgaacaaggcatgtaatcgtcc---------aaatagtagtgaccaaaatgttcttcttctc |
367 |
Q |
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| T |
45512631 |
ggagcaactattggtgaacaaggcatgtaatcgtccaaattgtacaaatagtagtgaccaaaatgttcttcttctc |
45512556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 22848797 - 22848928
Alignment:
| Q |
170 |
gagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtg |
269 |
Q |
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|||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||| ||||| || |||||||||||||||||||| |
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| T |
22848797 |
gagagagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagta |
22848896 |
T |
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| Q |
270 |
ttccaattgcaacaaagatgagctcacatttg |
301 |
Q |
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| T |
22848897 |
ttccaagtgcaacaaagatgagctcagatttg |
22848928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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