View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16762_low_5 (Length: 277)
Name: NF16762_low_5
Description: NF16762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16762_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 44917250 - 44917512
Alignment:
| Q |
1 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacgaatgcaccagcatcttctcttggtatagcatgtgtatttgtggttgttatgt |
100 |
Q |
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| T |
44917250 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacaaatgcaccagcatcttctcttggtatagcatgtgtatttgaggttgttatgt |
44917349 |
T |
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| Q |
101 |
tttgaggttgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaagctaaaacaatcactgctat |
200 |
Q |
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| T |
44917350 |
tttgagattgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaagctaaaacaatcactgctat |
44917449 |
T |
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| Q |
201 |
tgttgctagagaaactgcagtaaaaaatatgatccttgacaacattatgtgatgtttttaact |
263 |
Q |
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| T |
44917450 |
tgttgctagagaaactgcagtaaaaaatatgatccttgacaacattatgtgatgtttttaact |
44917512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 44903778 - 44903958
Alignment:
| Q |
1 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacgaatgcaccagcatcttctcttggtatagcatgtgtatttgtggttgttatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903778 |
acctttgatgtgttctctggtccctccgtaagtacgcggtgaaagacgaatgtaccagcatcttctcttggtatagcatgtgtatttgtggttgttatgt |
44903877 |
T |
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| Q |
101 |
tttgaggttgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaag |
181 |
Q |
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| T |
44903878 |
tttgaggttgttgaatgtaaagagatagatcaagccatggtcttgaatggatctttttatgtgaaacaggtgataccaaag |
44903958 |
T |
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