View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16762_low_6 (Length: 267)
Name: NF16762_low_6
Description: NF16762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16762_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 38061333 - 38061570
Alignment:
| Q |
13 |
aaaatacaccattgaatctttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagacttt |
112 |
Q |
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| T |
38061333 |
aaaatacaccattgaatctttggcaccatcttcatgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagacttt |
38061432 |
T |
|
| Q |
113 |
actttgaaaatatcctttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38061433 |
actttgaaaatatcctttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaac |
38061532 |
T |
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| Q |
213 |
tcatctcaatacaatcttctctaaccaaaccaagttct |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38061533 |
tcatctcaatacaatcttctctaaccaaaccaagttct |
38061570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 38059115 - 38058888
Alignment:
| Q |
19 |
caccattgaatctttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttg |
118 |
Q |
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|||||| | ||||||||||||||||||| |||||||| |||| |||| ||||||||||| ||||| |||||||||| | ||||||||||| ||||||||| |
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| T |
38059115 |
caccatggcatctttggcaccatcttcatgaaacataggccatattccttctaatccaacttcaggaatgggaattttgacaaaatcagattttactttg |
38059016 |
T |
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| Q |
119 |
aaaatatcctttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatct |
218 |
Q |
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| T |
38059015 |
taaatatcctttgcagcaagtgttctgttgagcaacgtttcaagtggttcgtctttcggaaacccgtaaaggtaaagaactgattcaacccaactcatct |
38058916 |
T |
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| Q |
219 |
caatacaatcttctctaaccaaaccaag |
246 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
38058915 |
caacacaatcttctctaaccaaaccaag |
38058888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 38073433 - 38073219
Alignment:
| Q |
35 |
gcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaaatatcctttgcag |
134 |
Q |
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|||||||||||| ||||| | |||| | || |||||| ||| |||||| ||| |||||| | ||||||||||| || ||||| || |||||||||||| |
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| T |
38073433 |
gcaccatcttcatcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttggaattatcctttgcag |
38073334 |
T |
|
| Q |
135 |
cttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttctct |
234 |
Q |
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|| ||||||||||||||||| ||||| ||| |||||||| ||||| | | ||||||||||||| ||||||||||||||||| |||| |||||||||||| |
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| T |
38073333 |
ctagtgttctgttgagcaacgtttcaagtggttcgccttctggaaaccgaaaaaggtaaagaactgattcaatccaactcatttcaacacaatcttctct |
38073234 |
T |
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| Q |
235 |
aaccaaaccaagttc |
249 |
Q |
| |
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||||||||||||||| |
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| T |
38073233 |
aaccaaaccaagttc |
38073219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 38086956 - 38086732
Alignment:
| Q |
22 |
cattgaatctttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaa |
121 |
Q |
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||||| |||||||| ||| |||||| ||| | | |||| || | |||||||||| |||||| ||| |||||||||||||||||||| ||| ||||||| |
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| T |
38086956 |
cattgcatctttggaaccctcttcatcaaataaaggccatatgccttctaatccagtttcaggaattggaattctcacaaaatcagattttgctttgaat |
38086857 |
T |
|
| Q |
122 |
atatcctttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaa |
221 |
Q |
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||||| || ||||||||||||||| ||||||| |||||||| ||||| ||||| | ||| ||||||||| ||||||||||||||||| |||| |
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| T |
38086856 |
atatcaagtgtagcttgtgttctgttaagcaacacttcaggtgtagaaccttttggaaactgaaaaaagtaaagaacagattcaatccaactcatttcaa |
38086757 |
T |
|
| Q |
222 |
tacaatcttctctaaccaaaccaag |
246 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
38086756 |
tacaatattctctaaccaaaccaag |
38086732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 38082520 - 38082302
Alignment:
| Q |
30 |
ctttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaaata--tcc |
127 |
Q |
| |
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|||||||||| |||||| |||||| | ||| |||| |||||||||| |||||| ||||||| || ||||||||||||| ||| ||||| ||||| || |
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| T |
38082520 |
ctttggcaccttcttcatgaaacaaagaccatattccttctaatccattttcaggaatgggagttttcacaaaatcagattttgctttgtaaataaatct |
38082421 |
T |
|
| Q |
128 |
t-------ttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctca |
220 |
Q |
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| |||||||| |||||||||| ||||||| ||||||| || | |||||||||||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
38082420 |
tgggctgtttgcagctagtgttctgttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttca |
38082321 |
T |
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| Q |
221 |
atacaatcttctctaacca |
239 |
Q |
| |
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||||||| |||||| |||| |
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| T |
38082320 |
atacaattttctctgacca |
38082302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 37954593 - 37954547
Alignment:
| Q |
200 |
gattcaatccaactcatctcaatacaatcttctctaaccaaaccaag |
246 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37954593 |
gattcaatccaactcatctcagtacaatcttctctaaccaaaccaag |
37954547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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