View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_high_13 (Length: 337)
Name: NF16763_high_13
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 45378892 - 45378575
Alignment:
| Q |
3 |
gcatatattttacaaaacgataaatttgttaaaaactaatactgagtttttcaagctaaattccaaactgatgtatgtacctatgtactttcatgatcat |
102 |
Q |
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| T |
45378892 |
gcatatattttacaaaatgataaatttgttaaaaactaatactgagtttttcaagctaaattccaaactgatgtatgtacctatgtactttcatgatcat |
45378793 |
T |
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| Q |
103 |
cagatagggattgatgaagcagattaatcgccacatgtcggcaacatgcttgtgttgttaaattttgtgcacacgtggcttatgctttaggcaaggaaac |
202 |
Q |
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| T |
45378792 |
cagatagggattgatgaagcagattaatcgccacatgtcggcaacatgcttgtgttgttaaattttgtgcacacgtggcttatgctttaggcaaggaaac |
45378693 |
T |
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| Q |
203 |
aaataacctttcataaaaattgacctaatcatgaaacaaactaaataagatgacatattatttattatctggacggtgctaaactaaatatgacacgtcc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45378692 |
aaataacctttcataaaaattgacctaatcatgaaacaaactaaataagatgacatattatttatcatctggacggtgctaaactaaatatgacacgtcc |
45378593 |
T |
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| Q |
303 |
aaggcagaatccaatacc |
320 |
Q |
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| T |
45378592 |
aaggcagaatccaatacc |
45378575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 33087462 - 33087295
Alignment:
| Q |
49 |
tttttcaagctaaattccaaactgatg---tatgtacctatgtactttcatgatcatc--agatagggattgatgaagcagattaatcgccacatgtcgg |
143 |
Q |
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| T |
33087462 |
ttttttaagttaaattccaaactgatgatgtatatacctatgtactttcatgatcatataaaatagggattgatgaagcagattaatcgccacatgtcgg |
33087363 |
T |
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| Q |
144 |
caacatgcttgtgttgttaaattttgtgcacacgtggcttatgctttaggcaaggaaacaaataacctt |
212 |
Q |
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| T |
33087362 |
caacatgcttgtgctgttccattttgtgcacacgt-gcttgtgctttgggcaaggaagcaaataacctt |
33087295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 22818993 - 22819027
Alignment:
| Q |
51 |
tttcaagctaaattccaaactgatgtatgtaccta |
85 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
22818993 |
tttcatgctaaattccaaactgatgtatgtaccta |
22819027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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