View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16763_high_14 (Length: 335)
Name: NF16763_high_14
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 3652738 - 3652419
Alignment:
| Q |
16 |
gaaagaagatttaaaatttcacttgnnnnnnntggctgagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataata |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3652738 |
gaaagaagatttaaaatttcacttgaaaaaaatggctgagtttttggatcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataata |
3652639 |
T |
|
| Q |
116 |
aagttgtgtagttttgagaaaatgaaggggttggagataaataagacaggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3652638 |
aagttgtgtagttttgagaaaatgaaggggttggagataaataatacaggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaag |
3652539 |
T |
|
| Q |
216 |
ttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3652538 |
ttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaa |
3652439 |
T |
|
| Q |
316 |
atagggttgcttcaactcct |
335 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
3652438 |
atagggttgctacaactcct |
3652419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 296
Target Start/End: Complemental strand, 1626544 - 1626301
Alignment:
| Q |
53 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttggaga |
152 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||| | |||||||||||||||||||| || || ||||| ||||| || ||||| || ||||| |
|
|
| T |
1626544 |
gagtttttgggttgtccttttactcaagaggaagaaagtaatggtgtgattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattggaag |
1626445 |
T |
|
| Q |
153 |
taaataagacaggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggt |
252 |
Q |
| |
|
|||||| | ||| || |||| || | ||| || |||| ||| ||| |||| || ||| | || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
1626444 |
caaataaatctggagtcttgggaaagatttatgacaaaaagtacttctttcgaaagggagaaataggggattggattaattatctttctccttcaatggt |
1626345 |
T |
|
| Q |
253 |
tgaaaaattgtccaaggtcattgaagagaagttaggtggatctg |
296 |
Q |
| |
|
|| || || ||||| |||| ||||| || ||| ||||||||| |
|
|
| T |
1626344 |
agataagttatccaaaatcatagaagaaaaattaagtggatctg |
1626301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 1617994 - 1617915
Alignment:
| Q |
53 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttga |
132 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| | ||||||||||||||||| || || || ||||| ||||| |
|
|
| T |
1617994 |
gagtttttgggttgtccttttactcaagaggaggaaagtaatggtgtgattgaaaatattatcaatttatgtagctttga |
1617915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 292
Target Start/End: Complemental strand, 4506242 - 4506131
Alignment:
| Q |
181 |
ctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagag |
280 |
Q |
| |
|
||||||||| |||||||| |||||||| | ||||| || ||||||| ||||||||||| |||| ||||| |||||| | ||||| |||| ||||| |
|
|
| T |
4506242 |
ctttgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcatagaagaa |
4506143 |
T |
|
| Q |
281 |
aagttaggtgga |
292 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
4506142 |
aagttaagtgga |
4506131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 15751676 - 15751740
Alignment:
| Q |
221 |
gattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagtt |
285 |
Q |
| |
|
||||||| ||| || ||||| ||||||||||| |||||| | ||||| |||||||||||||||| |
|
|
| T |
15751676 |
gattggattaactacctttctccttcaatggtagaaaaactatccaaaatcattgaagagaagtt |
15751740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University