View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_high_15 (Length: 331)
Name: NF16763_high_15
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 31321950 - 31321654
Alignment:
| Q |
13 |
tcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321950 |
tcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatca |
31321851 |
T |
|
| Q |
113 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321850 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcag |
31321751 |
T |
|
| Q |
213 |
aagtatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctc |
309 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321750 |
aagtatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctc |
31321654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 31334203 - 31333922
Alignment:
| Q |
13 |
tcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334203 |
tcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatca |
31334104 |
T |
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| Q |
113 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334103 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcag |
31334004 |
T |
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| Q |
213 |
aagtatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttcctt |
294 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334003 |
aagtatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttcctt |
31333922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 39110562 - 39110404
Alignment:
| Q |
56 |
gattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
155 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
39110562 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
39110463 |
T |
|
| Q |
156 |
caacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaa |
214 |
Q |
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|||| ||||| || | ||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
39110462 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 33521062 - 33521232
Alignment:
| Q |
59 |
tgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaa |
158 |
Q |
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|||||||| ||||| ||||| | ||| | |||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
33521062 |
tgaatagttatcatgggattgatacctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaa |
33521161 |
T |
|
| Q |
159 |
cagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaattccaa |
229 |
Q |
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| | |||||||| ||| | | ||| || |||||||||||||| || |||||||| | ||||| ||||||| |
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| T |
33521162 |
ccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatattccaa |
33521232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 10926351 - 10926283
Alignment:
| Q |
19 |
aaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaaca |
88 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
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| T |
10926351 |
aaaatttacaatc-tatttgaaatacaaaatgcagttgattgaatagttattagaggattaacactaaca |
10926283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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