View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16763_high_17 (Length: 304)

Name: NF16763_high_17
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16763_high_17
NF16763_high_17
[»] chr4 (8 HSPs)
chr4 (105-289)||(37000653-37000837)
chr4 (77-289)||(36987085-36987299)
chr4 (82-281)||(36980093-36980303)
chr4 (168-281)||(36996076-36996189)
chr4 (4-48)||(37000614-37000658)
chr4 (168-270)||(36984807-36984909)
chr4 (92-277)||(36980956-36981147)
chr4 (4-52)||(36995906-36995957)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 105 - 289
Target Start/End: Original strand, 37000653 - 37000837
Alignment:
Q  105 atgacctcttagcattgctcaagtctaaaatatttgtccttgggagaattctatttgcagtgaatatgaatgaatccttacttgcttggttgggggaaaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37000653 atgacctcttagcattgctcaagtctaaaatatttgtccttgggagaattctatttgcagtgaatatgaatgaatccttacttgcttggttgggggaaaa 37000752  T
Q  205 tctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctccatttctctgcacaagttcaagct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37000753 tctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctccatttctctgcacaagttcaagct 37000837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 36987085 - 36987299
Alignment:
Q  77 tgtaattgtaaacccaaacctttcacaaatgacctcttagcattgctcaagtctaaaa--tatttgtccttgggagaattctatttgcagtgaatatgaa 174  Q
    |||| |||||| || ||| ||||||||||||||||||||| ||  |||||||||||||  ||||||||  ||||||| ||||||||| || |||||||||    
T  36987085 tgtacttgtaagcctaaatctttcacaaatgacctcttagaatgcctcaagtctaaaatttatttgtctctgggagatttctatttggagcgaatatgaa 36987184  T
Q  175 tgaatccttacttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctccatttctct 274  Q
    ||||  ||||||||||||   |  ||||   || ||||||||  ||| ||| | || |||||||| ||||  || ||||||||||||||| |||||  ||    
T  36987185 tgaagtcttacttgcttgaaagcaggaagtacttttttctcaacagcgtccgagtctttgatgtctttgtgctcaatttggagtctttctgcatttgact 36987284  T
Q  275 gcacaagttcaagct 289  Q
    ||||||| |||||||    
T  36987285 gcacaagatcaagct 36987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 281
Target Start/End: Original strand, 36980093 - 36980303
Alignment:
Q  82 ttgtaaacccaaacctttcacaaatgacctcttagcattgctcaa-----gtctaaaat----atttgtccttgggagaattctatttgcagtgaatat- 171  Q
    |||||| || ||| |||||||||||||||| |||||||  |||||     |||||||||    |||||||||||| ||| ||||||||  | |||||||     
T  36980093 ttgtaagcctaaaactttcacaaatgaccttttagcatgcctcaactcaggtctaaaattttaatttgtccttggaagatttctattttaaatgaatata 36980192  T
Q  172 -gaatgaatccttacttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctccattt 270  Q
     |||| |||||||||||||||||||   | ||  ||| |||| ||| |||||||||||| |||||||| ||| |  ||| |||||| |||||||||||||    
T  36980193 tgaattaatccttacttgcttggttacagaaatttcttttttatcaatagcctccaaatacttgatgttctttttctctgtttggaatctttctccattt 36980292  T
Q  271 ctctgcacaag 281  Q
     ||||||||||    
T  36980293 ttctgcacaag 36980303  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 36996076 - 36996189
Alignment:
Q  168 atatgaatgaatccttacttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctcca 267  Q
    ||||| ||||| |||||||| || |||||  ||||| ||  |||||||| |||||||||||||||||||||| ||||  ||| ||| |||||||||||||    
T  36996076 atatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatccttgatgtctttgttctctgtttcgagtctttctcca 36996175  T
Q  268 tttctctgcacaag 281  Q
    |||  |||||||||    
T  36996176 tttgcctgcacaag 36996189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 37000614 - 37000658
Alignment:
Q  4 agcataggttgtctagcaccaacaatggcaacaaaaatcatgacc 48  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37000614 agcataggttgtctagcaccaacaatggcaacaaaaatcatgacc 37000658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 36984807 - 36984909
Alignment:
Q  168 atatgaatgaatccttacttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctcca 267  Q
    ||||||||||| | ||||||| |||||||  ||||  ||| ||| |||| ||||||||||||| |||||||| |||| |||| |||||||||| ||||||    
T  36984807 atatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgtttggagtctatctcca 36984906  T
Q  268 ttt 270  Q
    |||    
T  36984907 ttt 36984909  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 277
Target Start/End: Original strand, 36980956 - 36981147
Alignment:
Q  92 aaacctttcacaaatgacctcttagcattgctcaagtctaaaat----atttgtccttgggagaattctatttgcagtgaatat--gaatgaatccttac 185  Q
    |||| ||||||||||||| |||||||||  | ||||||||||||    ||| ||||| ||| || ||||||||  |||||||||  ||||||  ||||||    
T  36980956 aaacatttcacaaatgacgtcttagcatgtcacaagtctaaaattttaattggtcctggggggatttctattttgagtgaatatatgaatgaggccttac 36981055  T
Q  186 ttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctccatttctctgca 277  Q
    |||||||||||  ||||  ||| |||||||| |||| |||||| | | ||| || || |  ||| ||||||| |||||||||||| ||||||    
T  36981056 ttgcttggttgcaggaatttcttttttctcaatagcttccaaaccttggatatctttttgctctgtttggagcctttctccatttgtctgca 36981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 36995906 - 36995957
Alignment:
Q  4 agcataggttgtctagcaccaacaa---tggcaacaaaaatcatgaccacat 52  Q
    |||||||||| ||||||||||||||   || |||||||||||||||||||||    
T  36995906 agcataggttctctagcaccaacaacaatgacaacaaaaatcatgaccacat 36995957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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