View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_high_25 (Length: 227)
Name: NF16763_high_25
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 52444436 - 52444323
Alignment:
| Q |
116 |
caaataatagtgatcatatat--agtttctcctgatgaacctacaatggagacatataatttcttccttaacgttaatcgcttgaagcaggcgagtaata |
213 |
Q |
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| T |
52444436 |
caaatgatagtgatcatatatgtagtttctcctgatgaacctacaatggagacatataatttattccttaacgttaatcgcttgaagcaggcgagtaata |
52444337 |
T |
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| Q |
214 |
gttgaagacgatac |
227 |
Q |
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| T |
52444336 |
gttgaagacgatac |
52444323 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 52444505 - 52444431
Alignment:
| Q |
14 |
aatgattcatttccactaaataatatgtatttttaaaataacatgcgaatttaaatggtgtaaatttaacaaatg |
88 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
52444505 |
aatgatacatttccactaaataatatgtatttttaaaataacatgcaaattcaaatggtgtaaatttaacaaatg |
52444431 |
T |
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