View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_high_27 (Length: 212)
Name: NF16763_high_27
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 333341 - 333185
Alignment:
| Q |
21 |
atgactcaaaaatctcatcacaagaaacagaaaaaaccacaaaatctgaatgtccttcactcactataacaccaacatgcacaaaaaaccctccatcatt |
120 |
Q |
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| T |
333341 |
atgactcaaaaatctcatcgcaagaaacagaaaaaaccacaaaatctgaatgtccttcactccctataacaccaacatgcacaaaaaaccctccatcatt |
333242 |
T |
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| Q |
121 |
agccaatgcattaatccattatgcaacaacaaaaatcacccctcaacaaacaattca |
177 |
Q |
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| T |
333241 |
agccaatgcattaatccattatgcaacaacaaaaatcacccctcaacaaacaattca |
333185 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 130299 - 130339
Alignment:
| Q |
172 |
aattcataagaagctttgttcatctccgtaaggaactcaac |
212 |
Q |
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| T |
130299 |
aattcaaaagaagctttcttcatctccgtaaggaactcaac |
130339 |
T |
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