View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16763_high_6 (Length: 444)
Name: NF16763_high_6
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 79 - 429
Target Start/End: Original strand, 301453 - 301803
Alignment:
| Q |
79 |
tttggcgcatattctcttgtttttgattgaatactaactagtttaccatctcctttcaacagatttttgaccttgcaacttcttgtatggttgtgttatg |
178 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
301453 |
tttggtgcatattcaactgttttagattgaatactaactagtttaccatctcctttcaacagattttttaccttgcaacttcttgtatggttgtgttatg |
301552 |
T |
|
| Q |
179 |
ctgttatgtttcaccattacaaaaagcagtaattcttgatctgataaagagtcgtacaatataaaattagctataggggatggtgagtttttcataatca |
278 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
301553 |
ctgttgtgtttcaccattacaaaaagcagtaattgttgatctgataaagagtcgtacaatataaaattagctataggggatggtgagtttttcataatca |
301652 |
T |
|
| Q |
279 |
tatctgaaatagtctgcagtttatatgtgtactttgtttgggggactgagcagtgattgataaggatttgtcaataagttaggcttctttttcacttaat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
301653 |
tatctgaaatagtctgcagtttatatgtgtactttgtttgggggactgagcagtgattgataaggatttgtcaataagttaggcttctttttcacttaat |
301752 |
T |
|
| Q |
379 |
gtgtcacaggaacttttaatttttaaatatgttttcaaaatgagacctatg |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
301753 |
gtgtcacaggaacttttaatttttaaatatgttttcaaaattagacctatg |
301803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 27464956 - 27464860
Alignment:
| Q |
133 |
ttcaacagatttttgaccttgcaacttcttgtatggttgtgttatgctgttatgtttcaccattacaaaaagcagtaattcttgatctgataaagag |
229 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||| ||||||| | || ||| |||| |||| || || || || | |||| |||||||||||||||| |
|
|
| T |
27464956 |
ttcaacagctttttgaccttgcaatttcctgtaaggttgtgctgtgttgtcgtgttgcacccttgcagaaggctggaattgttgatctgataaagag |
27464860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University