View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_high_9 (Length: 380)
Name: NF16763_high_9
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 8079914 - 8079555
Alignment:
| Q |
14 |
atcaagaggttcatgaaggcaattaggaaccgtctcaaaatctaaatcaaaaagtacattttgcaggctaaattctatcactcattagagagcctttaag |
113 |
Q |
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| T |
8079914 |
atcaagaggttcatgaaggcaattaggaaccgtctcaaaatctaaatcaaaaagtacattttgcaggccaaattctatcactcattagagagc-tttagg |
8079816 |
T |
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| Q |
114 |
aagacatgtaattttaccaaagtgaaacaaaattaccaaagtgattgatgacacgtttttattagtatttgtttcacaaaattaccaatgtatttgtttc |
213 |
Q |
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| T |
8079815 |
aagacatgtaattttaccaaagtgaaacaaaattaccaaagtgattgatgacacgtttttattagtatttgtttcacaaaattaccaatgtatttgtttc |
8079716 |
T |
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| Q |
214 |
agaaaagnnnnnnnttgccaaagtgaaacaaatgagtgaaaccaaatcacctttgtgttaaaatgagtgacgttgtaagatgagtgccattttctaagag |
313 |
Q |
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| T |
8079715 |
agaaaagaaaaaaattgccaaagtgaaacaaatgagtgaaaccaaatcacctttgtgttaaaatgagtgacgttgtaagatgagtgccattttcaaagag |
8079616 |
T |
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| Q |
314 |
aacttgtgacctagggagtataagcttctaacttggaacttaggttggttatcccttgact |
374 |
Q |
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| T |
8079615 |
aacttgtgacctagggagtataagcttctaacttggaacttaggttggttatctcttgact |
8079555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 3012874 - 3012807
Alignment:
| Q |
303 |
ttttctaagagaacttgtgacctagggagtataagcttctaacttggaacttaggttggttatccctt |
370 |
Q |
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| T |
3012874 |
ttttctaagagaacttgtgatttaggaagcttatgattctaacttgaaacttaggttggtgatccctt |
3012807 |
T |
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