View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16763_low_1 (Length: 1083)
Name: NF16763_low_1
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 14930153 - 14929818
Alignment:
| Q |
9 |
ctgaaatgaataccaacacatgcttcttcctaaacacttcgatgctaacctgttgaattaacaacggaaattagagacgggaaaaaccaagaagctatgt |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| | |
|
|
| T |
14930153 |
ctgaaatgaataccaatacatgcttcttcctaaacacttcgatgctaacctgttgaattaacaacggaaattagagacagaaaaaactaagc-------t |
14930061 |
T |
|
| Q |
109 |
atttacttaatgaaaatgttttcacaaagtaaacggaccataatgttttgtgctttataattttgaaaactactaaaacttgttatttagcgacaaaata |
208 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
14930060 |
atttgcttagtgaaaatgttttcacaaagtaaacggaacataatgttgtatgcttt------ttgaaaactactaaaacttgtaatttagtgacaaaata |
14929967 |
T |
|
| Q |
209 |
tattggtccctctagcaaccgattttgctactgattttcaaatcagaagttaaaacgagtttgtgatcgattcagagattgatatnnnnnnntgtcgata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14929966 |
tattggtccctctagcaaccgattttgctactgattttcaaatcagaagttaaaacgagtttgtgatcgattcagagattgatat-aaaaaatgtcgata |
14929868 |
T |
|
| Q |
309 |
ttagttgccattgttagtgaccaatatagcggacaattcagtcatatctt |
358 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
14929867 |
ttagttgctattgttagcgaccaatatagcggacaattcaatcatatctt |
14929818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 757 - 963
Target Start/End: Complemental strand, 14929457 - 14929251
Alignment:
| Q |
757 |
ttacctatatgctttctgctccttgtaagatgagcctttaacttgcttacaatggaagcaagcttgacatcataacttgataattcatacctatcatccc |
856 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929457 |
ttacctatatgctttctgctccttgtaagatgagcctttaatttgcttacaatggaagcaagcttgacatcataacttgataattcatacctatcatccc |
14929358 |
T |
|
| Q |
857 |
tgaaataaattcatgaaaacattctcataaatattcctccgtctgatccatattaattgacacgttaaccttactacatgtcaatacataactttgacca |
956 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14929357 |
tgaaacaaattcatgaaaacactctcatgaatattactccgtctgatccatattaattgacacattaaccttactacatgtcaatacacaactttgacca |
14929258 |
T |
|
| Q |
957 |
ttaatat |
963 |
Q |
| |
|
|||||| |
|
|
| T |
14929257 |
ctaatat |
14929251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 352 - 559
Target Start/End: Complemental strand, 14929795 - 14929588
Alignment:
| Q |
352 |
atatctttaaacatgagccacatttgaatattaactaaccatttgtctgttcaagccatcaaacacaagggggtcctgaatttcattgtggaaaactaga |
451 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14929795 |
atatctttaaacatgaaccacatttaaatattaactaaccatttgtctgttcaagccatcaaacacaagggggtcctgaatttcattgtggaagactaga |
14929696 |
T |
|
| Q |
452 |
accttcaaaacctcaacaatttctgttggagtttgaagaaccctcttacgcctccagtaatcttccagctcacctgcaatatacacaaatgacttataat |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| | || | ||||||| |
|
|
| T |
14929695 |
accttcaaaacctcaacaatttctgttggagtttgaagaaccctcttacgtctccagtaatcttctagctcacctgcaatttacatacataatttataat |
14929596 |
T |
|
| Q |
552 |
tggcatct |
559 |
Q |
| |
|
|||||||| |
|
|
| T |
14929595 |
tggcatct |
14929588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1033 - 1083
Target Start/End: Complemental strand, 14929169 - 14929119
Alignment:
| Q |
1033 |
aaggaattaaagtacttacgaatcaccgaaaagaagatcaagatgattagc |
1083 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929169 |
aaggaattaaagtacttacgaatcaccgaaaagaagatcaagatgattagc |
14929119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 648 - 701
Target Start/End: Complemental strand, 14929563 - 14929510
Alignment:
| Q |
648 |
tcaatgtatgtatgtttccaaataatgcattgaaaattcagtgtttgtagctcc |
701 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
14929563 |
tcaatgtatgtgtgtttccaaataatgcattaaaaattcagtgtttgtatctcc |
14929510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 932 - 977
Target Start/End: Original strand, 38767110 - 38767155
Alignment:
| Q |
932 |
acatgtcaatacataactttgaccattaatatcattacttatctat |
977 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
38767110 |
acatgtcaatacaaaactttgaccattaatatctttagttatctat |
38767155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University