View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_11 (Length: 378)
Name: NF16763_low_11
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 37443963 - 37443764
Alignment:
| Q |
25 |
acataatacgaatttgaaccgcaaccgctatggggacgtaggtaaaattagtctttcttcgttatcaaacgtcgtgtgttctttcgagttatggagaatt |
124 |
Q |
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| T |
37443963 |
acataatacgaatttgaaccgcaaccgctatggggacgtaggtaaaattggtctttcttcgttatcaaacgtcgtgtgttctttcgagttatggagaatt |
37443864 |
T |
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| Q |
125 |
ctccataatcgtgatgcatttgcagccacatagaaattgtttacactatctgctctcaaaataatattggtatgttctgcacccaaaatgattattgaat |
224 |
Q |
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| T |
37443863 |
ctccataatcgtgatgcatttgcagccacatagaaattgttcacactatctcctctcaaaataatattggtatgttctgtacccaaaatgattattgaat |
37443764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 37443601 - 37443490
Alignment:
| Q |
216 |
ttattgaattgtatcctccttatgagggtaaagagggtaaaaaggaagcctctaaacgaaaacaaccttatccctattatatttacttgtaaaaggtaaa |
315 |
Q |
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| T |
37443601 |
ttattgaattgtatcctccttatgagg-taaagagggtaaaaaggaagcctctaaacgaaaaca---ttatccctattatatttacttgtaaaaggtaaa |
37443506 |
T |
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| Q |
316 |
aagcagcaacactatc |
331 |
Q |
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| T |
37443505 |
aagcagcaacactatc |
37443490 |
T |
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