View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_12 (Length: 348)
Name: NF16763_low_12
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 33158021 - 33157691
Alignment:
| Q |
16 |
ctaactatacacccgccgccgcctttacaattgaaggacacgatgctgtaaaaaagtgcaataaagacttaaattccattagggtgggccacgaatttat |
115 |
Q |
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| T |
33158021 |
ctaactatacacccgccgccgcctttacaattgaaggacacgatgctgtaaaaaagtgcaataaagacttaaattccattagggtgggccacgaatttat |
33157922 |
T |
|
| Q |
116 |
atagggttcaaagttatagcacattaaagtgccaaaaccttccaagcaagttgtagatccgttaaataaatggagttcgtttgtacctcatactcattgc |
215 |
Q |
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| T |
33157921 |
atagggttcaaagttatagcacattaaagtgccaaaaccttccaagcaagttgtagatccgttaaataaatggagttcgtttgtacctcatactcattgc |
33157822 |
T |
|
| Q |
216 |
caaaccaacctagctgataagtgaaaaaggtgctattctatttcttttggtttaatcgcggttttgatgcatcgatttttattattttatgaaattgatc |
315 |
Q |
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| T |
33157821 |
caaaccaacctagctgataagtgaaaaagatgttactctatttcttttggtttaatcgcagttttgatgcatcgatttttattattttatgaaattgatc |
33157722 |
T |
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| Q |
316 |
cctattttaaaatttgacacctttgcttctc |
346 |
Q |
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| T |
33157721 |
cctattttaaaatttgacacttttggttctc |
33157691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 15562134 - 15562182
Alignment:
| Q |
288 |
cgatttttattattttatgaaattgat--ccctattttaaaatttgaca |
334 |
Q |
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| T |
15562134 |
cgatttttatcattttatgaaattgatccccctattttaaaatttgaca |
15562182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 31421290 - 31421246
Alignment:
| Q |
290 |
atttttattattttatgaaattgatc--cctattttaaaatttga |
332 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
31421290 |
atttttattattttatgaaattgatcctcttattttaaaatttga |
31421246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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