View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_15 (Length: 337)
Name: NF16763_low_15
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 48424501 - 48424188
Alignment:
| Q |
18 |
tagccaagccagtagacgaaaatctttcatagattcttcaattcaacttgctagaaataacaacttcaatggtcttg-atcttgactgggagtatccatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48424501 |
tagccaagccagtagacgaaaatctttcatagattcttcaattcaacttgctagaaataacaacttcaatggtcttggatcttgactgggagtatccatc |
48424402 |
T |
|
| Q |
117 |
ctccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagcagttctggcaagccgacactgctgtta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48424401 |
ctccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagcagttctggcaagccgacactgctgtta |
48424302 |
T |
|
| Q |
217 |
tctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaacttggattgggtcaatgtaatgacttatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48424301 |
tctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaacttggattgggtcaatgtaatgacttatg |
48424202 |
T |
|
| Q |
317 |
accttttcatctca |
330 |
Q |
| |
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|||||||||||||| |
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| T |
48424201 |
accttttcatctca |
48424188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 51468082 - 51467770
Alignment:
| Q |
18 |
tagccaagccagtagacgaaaatctttcatagattcttcaattcaacttgctagaaataacaacttcaatggtcttgatcttgactgggagtatccatcc |
117 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| | ||| || ||||||||||||||| |||| ||||||||||| ||| ||||||||||| |
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| T |
51468082 |
tagccaagccagtacccgaaaatcattcatagattcttcaatccgactagccagaaataacaacttccatggccttgatcttgattggcagtatccatcc |
51467983 |
T |
|
| Q |
118 |
tccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagcagttctggcaagccgacactgctgttat |
217 |
Q |
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|| ||| | || | |||||||||||||||||||| | |||||||||||||||||| || ||||||||| ||||| | ||||||| |||| |||||| |
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| T |
51467982 |
tcagacgctgaaatgaccaactttggtttactcatcaaagagtggagagctgctgtggccgcagagtctaggagttccgacaagccggaactgttgttat |
51467883 |
T |
|
| Q |
218 |
ctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaacttggattgggtcaatgtaatgacttatga |
317 |
Q |
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||||||| |||||||||||||||||||| | | | |||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
51467882 |
ctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgttgcaaacaacttggattgggttaatgtaatgacctatga |
51467783 |
T |
|
| Q |
318 |
ccttttcatctca |
330 |
Q |
| |
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||||| ||||||| |
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|
| T |
51467782 |
cctttacatctca |
51467770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 330
Target Start/End: Complemental strand, 51482973 - 51482680
Alignment:
| Q |
37 |
aaatctttcatagattcttcaattcaacttgctagaaataacaacttcaatggtcttgatcttgactgggagtatccatcctccgacacagataaaacca |
136 |
Q |
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|
||||| ||||||||||||||||| | | | || |||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
51482973 |
aaatcattcatagattcttcaatccgagtagccagaaataacaactttcatggccttgatcttgactgggagtatccatcctcagacacagaaaaggcca |
51482874 |
T |
|
| Q |
137 |
actttggtttactcattacggagtggagagctgctgtgacccaagagtctagcagttctggcaagccgacactgctgttatctgctgccgtgggtggctc |
236 |
Q |
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||||||||| || || | ||| ||||||||||| |||||| ||| ||||| ||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
51482873 |
actttggttcgctaatcagggaatggagagctgccgtgaccacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctc |
51482774 |
T |
|
| Q |
237 |
tgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaacttggattgggtcaatgtaatgacttatgaccttttcatctca |
330 |
Q |
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||||||||| | | ||| | |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |
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| T |
51482773 |
tgatcagataactccattgaagtactaccctggtcaagatgttgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctca |
51482680 |
T |
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