View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_2 (Length: 1009)
Name: NF16763_low_2
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 725; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 7 - 788
Target Start/End: Complemental strand, 36764792 - 36764019
Alignment:
| Q |
7 |
tcgaacaatatcaatagaataattcattttatgtatttatgtatatgttaatctatctatctatgatctgattgattcatgtatttatgtaattatgtag |
106 |
Q |
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| T |
36764792 |
tcgaataatatcaatagaataattcattttatgtatttatgtatatgtttatctatctatctatgatctgattgattcatgtatttatgta--------g |
36764701 |
T |
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| Q |
107 |
agagattcctccgtcgttagatttggatctctccaccatggaaaacattgccgcgcaactaaagcgcggcatctcgcgccaattctcctccggctcttta |
206 |
Q |
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| T |
36764700 |
agagattcctccgtcgttagatttggatctctccaccatggaaaacattgccgcgcaactaaggcgcggcatctcgcgccaattctcctccggctcttta |
36764601 |
T |
|
| Q |
207 |
cgcaaaactctcagccgtcaattcacacgtcaagcatcgctcgatccacgtcggaacaatctccgattcagcttcggtcgtcaatcatcgctggacccga |
306 |
Q |
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| T |
36764600 |
cgcaaaactctcagccgtcaattcacacgtcaagcatcgctcgatccacgtcggaacaatctccgattcagcttcggtcgtcaatcatcgctggacccga |
36764501 |
T |
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| Q |
307 |
tccgacggagtccaggtgatgatgaagaccaggcggaactcaccgtaccggagaatctcgattccaccatgcagcttctcttcatggcgtgtcgtggtga |
406 |
Q |
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| T |
36764500 |
tccgacggagtccaggtgatgatgaagaccaggcggaactcaccgtaccggagaatctcgattccaccatgcagcttctcttcatggcgtgtcgtggtga |
36764401 |
T |
|
| Q |
407 |
tgttaaaggggttgaggatttgcttaacgaaggaattgatgttaatagcattgatcttgatggccgtactgctcttcatatcgctgcttgtgaaggacat |
506 |
Q |
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| T |
36764400 |
tgttaaaggggttgaggatttgcttaacgaaggaattgatgttaatagcattgatcttgatggccgtactgctcttcatatcgctgcttgtgaaggacat |
36764301 |
T |
|
| Q |
507 |
gttgatgttgcgaagcttttgctcagccgtaaggccaaccttgatgctcgtgatcgttggggtagtacggtaatttcacttaaacaattattgttccgac |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36764300 |
gttgatgttgcgaagcttttgctcagccgtaaggccaatcttgatgctcgtgatcgttggggtagtacggtaatttcacttaaacaattattgttctaac |
36764201 |
T |
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| Q |
607 |
tgtttctattattattcttattctcatcatcatacttatacttattttgaattagtcaattagctcgtgagtctttatcatacatattaatatttaattc |
706 |
Q |
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| T |
36764200 |
tgtttctattattattcttattctcatcatcatacttatacttattttgaattagtcaattagctcgtgagtctttatcatacatattaatatttaattc |
36764101 |
T |
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| Q |
707 |
aaattatttgttcttatttacctatgattctcacagttataattacgtggaatcagtcaaatagctcgtgatcatattataa |
788 |
Q |
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| T |
36764100 |
aaattatttgttcttatttacctatgattctcacagttataattacgttgaatcagtcaaatagctcgtgatcatattataa |
36764019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 842 - 991
Target Start/End: Complemental strand, 36763965 - 36763816
Alignment:
| Q |
842 |
acccactttcattgtcattgttctaaattaagaagaagaaacaaaaaatcatattcgcaattatttcaaaagaaaaattacagttgctgttgcaattacg |
941 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763965 |
acccactttcattgtcattgttctaaattaagaagaagaaaaaaaaaatcatattcgcaattatttcaaaagaaaaattacagttgctgttgcaattacg |
36763866 |
T |
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| Q |
942 |
ctgcgaattttgatgttgccgtaaaatgttagcagcaaatgcagtcgatg |
991 |
Q |
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| T |
36763865 |
ctgcgaattttgatgttgccgtaaaatgttagcagcaaatgcagtcgatg |
36763816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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