View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_20 (Length: 279)
Name: NF16763_low_20
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 43221896 - 43222152
Alignment:
| Q |
9 |
attattctttagagtaactggttattttactatgcagagaagaggtgaatgtgaaaaacaaggcgttgagtgcaagcaagtaaatggtggtaatgaagat |
108 |
Q |
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| T |
43221896 |
attattttttagagtaactggttattttactatgcagagaagaggtgaatgtgaaaaacaaggcgttgagtgcaagcaagtaaatggtggtaatgaagat |
43221995 |
T |
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| Q |
109 |
aacgatttggagagtgaagactatatctacaccaactcagtgttaccctagatcaaacacactgcttgcatgtattatgaagtaatttattccttactat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43221996 |
aacgatttggagagtgaagactatatctacaccaactcagtgttaccctagatgaaacacactgcttgcatgtattatgaagtaatttattccttactat |
43222095 |
T |
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| Q |
209 |
-----ttcctctactgaatgatgatgtattttagctgtgattttgtttgaagctagt |
260 |
Q |
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| T |
43222096 |
ttcaattcctctactgaatgatgatgtattttagttgtgattttgtttgaagctagt |
43222152 |
T |
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