View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_24 (Length: 249)
Name: NF16763_low_24
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 22744011 - 22744230
Alignment:
| Q |
12 |
cacagatgaacagatttgggaggtaattcttcttgacaatgagaaataactgatccctttactgcaagttatacaaattaatatattttatcaaatattt |
111 |
Q |
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| T |
22744011 |
cacagatgaacagatttgggaggtaattcttcttgacaatgagaaataactgatccctttactgcaagttatacaaattaatatattttatcaaatattt |
22744110 |
T |
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| Q |
112 |
caggctctagatatgtgtcaacttggtgatgaagtgaggaagaaagaaggaaagctggactccacaggtttgacttctcaaaactttaagcaaataaaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22744111 |
caggctctagatatgtgtcaacttggtgatgaagtgaggaagaaagaaggaaagctgcactccacaggtttgacttctcaaaactttaagcaaataaaaa |
22744210 |
T |
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| Q |
212 |
ctcactccattcttgattaa |
231 |
Q |
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||||||||||||| |||||| |
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| T |
22744211 |
ctcactccattctagattaa |
22744230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 22666993 - 22666799
Alignment:
| Q |
13 |
acagatgaacagatttgggaggtaattc-----ttcttgacaatgagaaataactgatccctttactgcaagttatacaaattaatatattttatcaaat |
107 |
Q |
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||||||||||||||||||||||||||| | ||||| || | ||||||| ||||| |||| | |||||||||||| || | ||||||| | |||| |
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| T |
22666993 |
acagatgaacagatttgggaggtaatttagttttgcttgaaaagaaaaaataaccgatccttttagttcaagttatacaatttca-atattttgtgaaat |
22666895 |
T |
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| Q |
108 |
atttcaggctctagatatgtgtcaacttggtgatgaagtgaggaagaaagaaggaaagctggactccacaggtttgacttctcaaaactttaagca |
203 |
Q |
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| T |
22666894 |
gttttaggctctagatatgtgccaacttggagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttgacttctcaaaactttaagca |
22666799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 22723632 - 22723438
Alignment:
| Q |
13 |
acagatgaacagatttgggaggtaattc-----ttcttgacaatgagaaataactgatccctttactgcaagttatacaaattaatatattttatcaaat |
107 |
Q |
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||||||||||||||||||||||||||| | ||||| || | ||||||| ||||| |||| | |||||||||||| || | ||||||| | |||| |
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| T |
22723632 |
acagatgaacagatttgggaggtaatttagttttgcttgaaaagaaaaaataaccgatccttttagttcaagttatacaatttca-atattttgtgaaat |
22723534 |
T |
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| Q |
108 |
atttcaggctctagatatgtgtcaacttggtgatgaagtgaggaagaaagaaggaaagctggactccacaggtttgacttctcaaaactttaagca |
203 |
Q |
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||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
22723533 |
gttttaggctctagatatgtgccaacttggagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttgacttctcaaaactttaagca |
22723438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 32118179 - 32118127
Alignment:
| Q |
121 |
gatatgtgtcaacttggtgatgaagtgaggaagaaagaaggaaagctggactc |
173 |
Q |
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|||| ||||||||| || |||||||| || ||||||||||||||||| ||||| |
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| T |
32118179 |
gataagtgtcaactgggagatgaagttagaaagaaagaaggaaagcttgactc |
32118127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 14377803 - 14377871
Alignment:
| Q |
121 |
gatatgtgtcaacttggtgatgaagtgaggaagaaagaaggaaagctggactccacaggtttgacttct |
189 |
Q |
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|||| ||||||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| |
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| T |
14377803 |
gataagtgtcaactgggagatgaagttagaaagaatgaaggaaagcttgactcttcaggtttgtcttct |
14377871 |
T |
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