View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16763_low_26 (Length: 239)
Name: NF16763_low_26
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_26 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 13836378 - 13836597
Alignment:
| Q |
18 |
ggggtaacttacattcgatatcccaacaaagtaaacagttccatccttagtagccccatatgcaaggtcttccatgctccttcttgttggaccatagaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13836378 |
ggggtaacttacattcgatatcccaacaaagtaaacagttccatccttagtagccccatatgcaaggtcttccatgctccttcttgttggaccatagaac |
13836477 |
T |
|
| Q |
118 |
ttgtctattaaagcaaacccttctaagccaattttccttaggtctgatgaaggaggtgccattgatgctaaatgttggagctgaagaaaatgtttctatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13836478 |
ttgtctattaaagcaaacccttctaagccaattttccttaggtctgatgaaggaggtgccattgatgctaaatgttggagctgaagtaaatgtttctatt |
13836577 |
T |
|
| Q |
218 |
ctatatcaagtgtgtgttggtt |
239 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
13836578 |
c--tatcaagtgtgtgttggtt |
13836597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 13847642 - 13847847
Alignment:
| Q |
19 |
gggtaacttacattcgatatcccaacaaagtaaacagttccatccttagtagccccatatgcaaggtcttccatgct---ccttcttgttggaccataga |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||| | ||| |||||| |||||| |||||||||||||||||| | |
|
|
| T |
13847642 |
gggtaacttacattcgatatatcaacaaagtaaacagttccatccttgctaaccccagaagcacggtcttgcatgctgatccttcttgttggaccataaa |
13847741 |
T |
|
| Q |
116 |
acttgtctattaaagcaaacccttctaagccaattttccttaggtctgatgaaggaggtgccattgatgctaaatgttggagctgaagaaaatgtttcta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||| |
|
|
| T |
13847742 |
acttgtctattaaagcaaacccttctaagccaatcttccttaggtctgatgaaggaggtgccattgatgctaaatgttggaggtcaataaaatgcttcta |
13847841 |
T |
|
| Q |
216 |
ttctat |
221 |
Q |
| |
|
||||| |
|
|
| T |
13847842 |
atctat |
13847847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University