View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16763_low_27 (Length: 237)
Name: NF16763_low_27
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34501715 - 34501951
Alignment:
| Q |
1 |
tataagtgctaaaatcaaagcaaacactatccataactaacaataacaa------aagagcattgttatttggcacggaaaaa-tccgcaccgaacatgc |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34501715 |
tataagtgctaaaatcaaagcaaacactatccataactaacaataacaataacaaaagagcattgttatttggcacggaaaaaatccgcaccgaacatgc |
34501814 |
T |
|
| Q |
94 |
acaaagagattnnnnnnncaat-------ataaacaaacatggtgaggatggttttgaaacatttacagcaatgggcataaaccacacatgcttttgttg |
186 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34501815 |
acaaagagattaaaaaaacaatcagactgataaacatacatggtgaggatggttttgaaacatttacagcaattggcataaaccacacatgcttttgttg |
34501914 |
T |
|
| Q |
187 |
gatccaatgctgtaaatcgccaatgatagaaaatagt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34501915 |
gatccaatgctgtaaatcgccaatgatagaaaatagt |
34501951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University