View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_29 (Length: 225)
Name: NF16763_low_29
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43344411 - 43344191
Alignment:
| Q |
1 |
tctcttttgttccttgtaagtgtgttgtttgtttttaagtttgccattggaaaatccaaatccaaaaccaatccaaaacaacttccatctccaccgaaac |
100 |
Q |
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| T |
43344411 |
tctcttttgttccttgtaagtgtgttgtttgtttttaagtttgccattggaaaatctaaatccaaaaccaatccaaatcaacttccatctccaccgaaac |
43344312 |
T |
|
| Q |
101 |
taccgatcatcggtaatcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43344311 |
taccgatcatcggtaatcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttggg |
43344212 |
T |
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| Q |
201 |
acaaaaacaaaatccaactct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43344211 |
acaaaaacaaaatccaactct |
43344191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 43361325 - 43361121
Alignment:
| Q |
1 |
tctcttttgttccttgtaagtgtgttgtttgtttttaagtttgccattggaaaatccaaatccaaaaccaatccaaaacaacttccatctccaccgaaac |
100 |
Q |
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|||||||| ||||| ||||||||| || |||| ||||||||||| ||| ||||||||||| |||||| ||| || | ||| ||||||||||||| |
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| T |
43361325 |
tctcttttcttcctagtaagtgtgctgattgtgtttaagtttgcaattagaaaatccaaa------accaatataaatcagcctccgtctccaccgaaac |
43361232 |
T |
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| Q |
101 |
taccgatcatcggtaatcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttggg |
200 |
Q |
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| T |
43361231 |
ttccgatcatcggtaatcttcatcagctaggcacacttccataccgttctcttcgaaacctatcacacaaatatggaaacataatgttattgcaattagg |
43361132 |
T |
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| Q |
201 |
acaaaaacaaa |
211 |
Q |
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||||| ||||| |
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| T |
43361131 |
acaaagacaaa |
43361121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 43357198 - 43357314
Alignment:
| Q |
105 |
gatcatcggtaatcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttgggacaa |
204 |
Q |
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|||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||| | ||| ||| ||||| ||||| || ||||||||||| |||||| |
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| T |
43357198 |
gatcattggtaatcttcatcctctaggcacactcccacattgttctcttcgagacgtatcaatcatatatgacgacataatattgttgcagtttggacaa |
43357297 |
T |
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| Q |
205 |
aaacaaaatccaactct |
221 |
Q |
| |
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| ||||| |||||||| |
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| T |
43357298 |
agacaaacaccaactct |
43357314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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