View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16763_low_3 (Length: 854)
Name: NF16763_low_3
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 9 - 837
Target Start/End: Complemental strand, 23788280 - 23787453
Alignment:
| Q |
9 |
tcgaagaatattacaagtgaatgcaacgattcttattccaagggatatactctgcaacattgaaatcaattttggcctacagtctaatcatacttagcta |
108 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23788280 |
tcgaacaatattacaagtcaatgcaacgattcttattccaagggatatactctgcaacattgaaatcaattttggcctacagtctaatcatacttagcta |
23788181 |
T |
|
| Q |
109 |
tataagcagctctcaaacacttagcaaagtgcacaagaaataccaagaaaaactcacatatgtttttagagaaacacatctgataagttagaaagaaata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23788180 |
tataagcagctctcaaacacttagcaaagtgcacaagaaataccaagaaaaactcacatatgtttttagagaaacacatctgataagttagaaagaaata |
23788081 |
T |
|
| Q |
209 |
cacaagggatatacatttcacatactttccattgaaatatcaaacacatgtgtaatttataaagcatttatttgtgatcgtatcattgttgtaactcctc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23788080 |
cacaagggatatacatttcacatactttccattgaaatatcaaacacatgtgtaatttataaagcatttatttgtgatcgtatcattgttgtaactcctc |
23787981 |
T |
|
| Q |
309 |
aaaggataaggtgtaggcacgctatttgggaagacaataagattaggttagtcaaaagtctttgtagcgagaaatctaaggtattgtttggtagacaagg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23787980 |
aaaggataaggtgtaggcacgctatttgggaagacaataagattaggttagtcaaaagtctttgtagcgagaaatctaaggtattgtttggtagacaagg |
23787881 |
T |
|
| Q |
409 |
atatatcttggtgtttgtaataggttcagattatagtgaaagtccttcaaggatataccttattatgcttttatcaaatctcacggtttgataactagaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23787880 |
atatatcttggtgtttgtaataggttcagattatagtgaaagtccttcaaggatataacttattatgcttttgtcaaatctcacggtttgataactagaa |
23787781 |
T |
|
| Q |
509 |
tcaaataatcataacctatgaaatccttacttaaagatattgcttagaaacaataagatacaattataattctttgaaaatcatatcaacaaggaagaat |
608 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23787780 |
taaaataatcataacctatgaaatccgtacttaaagatattgcttagaaacaataagataaaattagaattctttaaaaatcatatcaacaaggaagaat |
23787681 |
T |
|
| Q |
609 |
tgagttttatggaaagtcagataattgaatttatttccacaattctaagattttggggtctcctcacacatgcttattgtagacaaaataaaacaaacta |
708 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23787680 |
tgagttttatggaaagtc-tatcattgaatttatttccacaattctaagactttggggtctactcacacatgctcattgtagacaaaataaaacaaacta |
23787582 |
T |
|
| Q |
709 |
aggacacaaggttaaaataaaacgaaattgtgcagtttattgaaataataacaaaaatgtaagaacatgtgacatttaacatgggaaagacaaagagttt |
808 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23787581 |
agaacacaaggttaaaataaaacgaaattgtgcagtttattgaaataataacaaaaatgcaagaacatgtgacatttaacatgggaaagacaaagagttt |
23787482 |
T |
|
| Q |
809 |
tacaccatgaaaaagttaattttgaccat |
837 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
23787481 |
tacaccatgataaagttaattttgaccat |
23787453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 34725446 - 34725380
Alignment:
| Q |
15 |
aatattacaagtgaatgcaacgattcttattccaagggatatactctgcaacattgaaatcaatttt |
81 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34725446 |
aatagtacaagtcaatgcaatggctcttattccaagggatatactctgcaatgttcaaatcaatttt |
34725380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 34725262 - 34725197
Alignment:
| Q |
162 |
tcacatatgtttttagagaaacacatctga-taagttagaaagaaatacacaagggatatacattt |
226 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
34725262 |
tcacatatatttttagagaaccacatttttctaagttagaaagaaatacacatgtgatatacattt |
34725197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University