View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16763_low_4 (Length: 509)
Name: NF16763_low_4
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16763_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 494
Target Start/End: Complemental strand, 51968130 - 51967651
Alignment:
| Q |
15 |
aaaatcccctagagttaactcaatatcaaatcctacttctcctcgctctcctttgaagttgtccctcttcaaaaacagcttcaaattcagggtatgaatt |
114 |
Q |
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| T |
51968130 |
aaaatcccctagagttaactcaatatcaaatcctacttctcctcgctctcctttgaagttgtccctcttcaaaaacagcttcaaattcagggtatgaatt |
51968031 |
T |
|
| Q |
115 |
ccttttttcctatgttattgagatccaaataatgatactgatctgccttatttattttgatattattgtttgattcagagtagctgtggaatctgtttga |
214 |
Q |
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| T |
51968030 |
ccttttttcctattttattgagatccaaataatgatactgatctgccttatttattttgatattattgtttgattcagagtagctgtggaatctgtttga |
51967931 |
T |
|
| Q |
215 |
atagcgtgaaaacagggcagggtaaggcaatatacacagcagaatgtgcacatgcttttcatttcccttgcatagcagcacatgtacgcaaccatgctac |
314 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51967930 |
atagcgtgaaaacggggcaggggaaggcaatatacacagcagaatgtgcacatgcttttcatttcccttgcatagcagcacatgtacgcaaccatgctac |
51967831 |
T |
|
| Q |
315 |
ccttgtttgccctgtctgcaactccacatggaaagacgttcctcttctagcggcgcacaagaatctcgcttcttctcaacaaattcccaatgcaattcca |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
51967830 |
ccttgtttgccctgtctgcaacgccacatggaaagacgttcctcttctagcggcgcacaagaatcttgcttcttcacaacaaattcccaatgcaattcca |
51967731 |
T |
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| Q |
415 |
aaccacaaaatacctacagtaaatccctctcctgttatcagaaccaagaacgtggatcactctcaacaacagcaacaaac |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51967730 |
aaccacaaaatacctacagtaaatccctctcctgttatcagaaccaagaacgtggatcactctcaacaacagcaacaaac |
51967651 |
T |
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