View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16763_low_7 (Length: 443)

Name: NF16763_low_7
Description: NF16763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16763_low_7
NF16763_low_7
[»] chr8 (3 HSPs)
chr8 (232-426)||(40311434-40311629)
chr8 (76-124)||(40311278-40311326)
chr8 (30-63)||(40311217-40311250)
[»] chr3 (1 HSPs)
chr3 (234-305)||(45175752-45175823)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 40311434 - 40311629
Alignment:
Q  232 ttccaactggttatatccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctgaaagggtatgcaatacagtttttacctatgaagc 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311434 ttccaactggttatatccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctgaaagggtatgcaatacagtttttacctatgaagc 40311533  T
Q  332 cctaacagggacacaaacgccgaatgtaataacatg-tgttaatgtgtagccggacaaaagtgtcggagctacttaggttattacaatttacaact 426  Q
    ||||||| ||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311534 cctaacacggacacaaacgccgaatgtaataacatgccgttagtgtgtagccggacaaaagtgtcggagctacttaggttattacaatttacaact 40311629  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 40311278 - 40311326
Alignment:
Q  76 tgtttcatgttattgattttgttactttgtggtatttgtaggatatctc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311278 tgtttcatgttattgattttgttactttgtggtatttgtaggatatctc 40311326  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 40311217 - 40311250
Alignment:
Q  30 ctaaggtaaatttgatgcagttttctttaccccc 63  Q
    ||||||||||||||||||||||||||||||||||    
T  40311217 ctaaggtaaatttgatgcagttttctttaccccc 40311250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 45175752 - 45175823
Alignment:
Q  234 ccaactggttatatccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctgaaagggta 305  Q
    |||||||| |||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  45175752 ccaactggctatatccacgtccgagcaagaaggggtcaggccactgatagccacagccttgctgaaagggta 45175823  T

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