View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_high_6 (Length: 354)
Name: NF16764_high_6
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 53089499 - 53089765
Alignment:
| Q |
16 |
ccatcaacatgctttcttctttagctttctctagattttctcgtgtttcctccagctcagctgtaacgttttcaacccttgaagactgatcaaccccatt |
115 |
Q |
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| T |
53089499 |
ccatcaacatgctttcttctttagctttctctagattttctcgtgtctcctccagctcagctgtaacgttttcaacccttgaagactgatcaaccccatt |
53089598 |
T |
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| Q |
116 |
ttcatttgctccattgtgaatctat----------------agacgaacaacaataaactattaatcatgtgtggaagtgtaaattttaaaccataaaca |
199 |
Q |
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| T |
53089599 |
ttcatttgctccattgtgaatctatatattagaagacatggagacgaacaacaataaattattaatcatgtgtggaagtgtaaattttaaaccataaaca |
53089698 |
T |
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| Q |
200 |
agtgatcatgaggaaattagactgtcagataatccttattaatctctaagatgcccaaaatgttttt |
266 |
Q |
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| T |
53089699 |
agtgatcatgaggaaattagaccgtcagataatcctaattaatctctaagatgcccaaaatgatttt |
53089765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 53089819 - 53089901
Alignment:
| Q |
259 |
atgtttttactttttacatacctacgggtcaataattaatttttctgaccaaatgattaataatttgagtatatctatcattc |
341 |
Q |
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| T |
53089819 |
atgtttttactttttacatacctacgggtcaataattaatttttctgaccaaatgattaataatttgagtatatctatcattc |
53089901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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