View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16764_high_9 (Length: 211)
Name: NF16764_high_9
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 39280462 - 39280280
Alignment:
| Q |
18 |
atcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39280462 |
atcaatatagtgtatgtgatcacattgggctcaaaacctttcttgaccatctcatctaagaattcaagagcagagaccagatacccctttttgcaaagcc |
39280363 |
T |
|
| Q |
118 |
cgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39280362 |
catcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatccttggcttct |
39280280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 17349862 - 17350044
Alignment:
| Q |
18 |
atcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||| |||||||| || |||||| |||||||| | |
|
|
| T |
17349862 |
atcaatatagtgtatgtgatcacatttggctcaaaacctttctctaccatctcatttaagaattcaagagcagagaccaaataccccttcttgcaaagtc |
17349961 |
T |
|
| Q |
118 |
cgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
200 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
17349962 |
catcgatcattatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttggtacagaagatccttggcttct |
17350044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University