View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16764_low_1 (Length: 753)
Name: NF16764_low_1
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 11 - 688
Target Start/End: Original strand, 10341022 - 10341701
Alignment:
| Q |
11 |
gagagatgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcaccct |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341022 |
gagaaatgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcaccct |
10341121 |
T |
|
| Q |
111 |
tgacatttgtcattttcattagatgttaggtatttagtcatataagcaacnnnnnnnggagtgatggtggttacaaagagttgtttctttcaatgattga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341122 |
tgacatttgtcattttcattagatgttaggtatttagtcatataagcaacaaaaaaaggagtgatggtggttacaaagagttgtttctttcaatgattga |
10341221 |
T |
|
| Q |
211 |
gggtttcatgatggttttaataaatcaacaaagctaaggaagtagttctggtatggtccaaaagggtgaccaaacctgcaccacttgggtgggccagatt |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10341222 |
gggtttcatgatggttt-aataaatcaacaaagctaaggaagtagttctggtatagtccaaaagggtgaccaaacctgcaccaattgggtgggccagatt |
10341320 |
T |
|
| Q |
311 |
gtctgagatccactttgagattgagttgagcttatggtgtcgtccgagtctcgaatagatcattcactaaacgcacattggtttttagagtgctcgagtg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10341321 |
gtctgagatccactttgagattgagttgagcttatggtgtcgtcggagtctcgaatagatcattcactaaacgcacattggtttttagagtactcgagtg |
10341420 |
T |
|
| Q |
411 |
attgagctcaagtgattaatgagtttcacttaaggacagatcgttcaggagaatccaaattcaaatcctaaatggaataattcatagccagactttacat |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341421 |
attgagctcaagtgattaatgagtttcacttaaggacagatcgttcacgagaatccgaattcaaatcctaaatggaataattcatagccagactttacat |
10341520 |
T |
|
| Q |
511 |
gtcacttgtcttctaactgaatttcagattaccaaaatatgagagaaccagagggttaac---acaacaacaacaaaaatgacactattgccttccatta |
607 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341521 |
gtcacttgtcttctaactgaatttaagattaccaaaatatgagagaaccagagggttaacacaacaacaacaacaaaaatgacactattgccttccatta |
10341620 |
T |
|
| Q |
608 |
tactaggctgctagcaatagttcaaccttggtagtatagttatagagacatttccgatctcaacaacatatgtgaatattt |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341621 |
tactaggctgctagcaatagttcaaccttggtagtatagttatagagacatttccgatctcaacaacatatgtgaatattt |
10341701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 731
Target Start/End: Original strand, 10341700 - 10341730
Alignment:
| Q |
701 |
ttatgaaagtttaacgaagatttgtctgcaa |
731 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10341700 |
ttatgaaagtttaacgaagatttgtctgcaa |
10341730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 13126424 - 13126360
Alignment:
| Q |
407 |
agtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttcaggagaatccaaatt |
471 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
13126424 |
agtgattgagctcaagtggttaatgagtttcaccaaaggacgtatcgttcgagagaacccaaatt |
13126360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University