View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_10 (Length: 271)
Name: NF16764_low_10
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 13946420 - 13946165
Alignment:
| Q |
1 |
attagtttctttttctcttttttggttgttctcggtaatgtaatgacgtgactttactcnnnnnnnnn-acacttcttgtgttgaaaagacttgtttgtg |
99 |
Q |
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| T |
13946420 |
attagtttctttttctcttttttggttgttctcggtaatgtaatgacgtgactttactctctttttttgacacttcttgtgttgaaaagacttatttgtg |
13946321 |
T |
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| Q |
100 |
ttgataatatatttcattttatcttcttaacaaacatacctcgccccttcactatgtaatatgttaatgtctcatagattagcttggagaggttatcatg |
199 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13946320 |
ttgataatatatttcattttatcctcttaacaaacatacctcgccccttcactatgtaatatgttaatgtctcatagattagcttggagaggttatcatg |
13946221 |
T |
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| Q |
200 |
tgnnnnnnncccaacacccatagatcagcttggagggacagtggtaataacactca |
255 |
Q |
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| T |
13946220 |
tgtttttttcccaacacccatagatcagcttggaggaacagtggtaataacactca |
13946165 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 31453911 - 31453878
Alignment:
| Q |
94 |
tttgtgttgataatatatttcattttatcttctt |
127 |
Q |
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| T |
31453911 |
tttgtgttgataatatatttcattttagcttctt |
31453878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 465016 - 465048
Alignment:
| Q |
95 |
ttgtgttgataatatatttcattttatcttctt |
127 |
Q |
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| T |
465016 |
ttgtgttgataatatatttcattttaacttctt |
465048 |
T |
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