View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_2 (Length: 510)
Name: NF16764_low_2
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 48828496 - 48828614
Alignment:
| Q |
13 |
tgaataaaatttgacattttcaatcatatttcagcaatctcaaacagaagcccagattcctaattttctaagagtattttcataatttggtcaattgctt |
112 |
Q |
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| T |
48828496 |
tgaataaaatttgacattttcaatcatatttcagcaatctcaaacagaagcccagattcctaattttctaagagtgttttcataatttggttaattgctt |
48828595 |
T |
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| Q |
113 |
gatattaacggtttatccc |
131 |
Q |
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| T |
48828596 |
gatattaacggtttatccc |
48828614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 48828725 - 48828766
Alignment:
| Q |
441 |
tatcacccaatatcaaacaatgtgagactttttcaacatgtg |
482 |
Q |
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| T |
48828725 |
tatcacccaatatcaaacaatgtgagactttttcaacatgtg |
48828766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 48828617 - 48828655
Alignment:
| Q |
323 |
caacaacattgtgacatagcaaggttggctatctcggtt |
361 |
Q |
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| T |
48828617 |
caacaacattgtgacatagcaaggttggctatctcggtt |
48828655 |
T |
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