View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_4 (Length: 482)
Name: NF16764_low_4
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 464
Target Start/End: Original strand, 40663107 - 40663568
Alignment:
| Q |
15 |
agcacagacgtataagcaacccatgaggatgaaaaggagtaatacaatgcagaagatgcattggattggtggaggtgatgctatggtagcgctgtgctga |
114 |
Q |
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| T |
40663107 |
agcactgacgtataagcaacccatgaggatgaaaaggagtaatagaatgcagaagatgcattggattggaggaggtgatgctatggtagcgctgtgctga |
40663206 |
T |
|
| Q |
115 |
aaatcaagcgtgcgtgaatgaa---tattgttgtttttcatgttactatgtataagtaataaatctgctcatgtttacaaccagc----ttggttggtca |
207 |
Q |
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| T |
40663207 |
aaatcaagcgtgcgtgaatgaatattattgttgtttttcatgttactatgtataagtaataaatctgctcatgtttacaaccagcttcgttggttggtca |
40663306 |
T |
|
| Q |
208 |
tcatctgttcaaactttttctcttttgactctccaaa--ctccttcactacctaactttcaacctaggacctaaggttgaggtttgtataaaacctctta |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40663307 |
tcatctgttcaaactttttctcttttgactctccaaactctccttcagtacctaactttcaacctaggacctaaggttgaggtttgtat-aaacctctta |
40663405 |
T |
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| Q |
306 |
ggaaaccgcatacataggggaatatgaaattaagcattttgat----nnnnnnnnnnnnnttaggaaattaattaagcacttaccagcaaatgctgatca |
401 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
40663406 |
ggaaaccgcatacataagggaatatgaaattaagcattttgataaaaaaaaaataaaaaattaggaaattaattaagcacttactagcaaatgctgatca |
40663505 |
T |
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| Q |
402 |
aggccaactaaacccaagtacattaaatagctagtcacggcgttgtaatttggtggaatggtg |
464 |
Q |
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| T |
40663506 |
aggccaactaaacccaagtacattaaatagctagtcacggcgttgtaatttggtggaatggtg |
40663568 |
T |
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