View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_5 (Length: 443)
Name: NF16764_low_5
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 427
Target Start/End: Original strand, 10361167 - 10361589
Alignment:
| Q |
5 |
atttgattggtgtgatagatgatgaccaccaacgattgttacaaattatgcagtttgctcaagaggtgaaattgactcctaaaaatgatattatttgaac |
104 |
Q |
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| T |
10361167 |
atttgattggtgtgatagatgatggccaccaacgattgttacaaattatgcagtctgctcaagaggtgaaatagactcctaaaaatgatattatttgaac |
10361266 |
T |
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| Q |
105 |
ataaaaaattaacacaatatcnnnnnnnaattgt-ttcggagttaattatatattgtctttattaattgagttaaattcactcacgtcaaatacaaatac |
203 |
Q |
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| T |
10361267 |
ataaaaaattgacatgatat-tttttttagtagtgttcggagtcaattatgtattgtcgttatcaactgagttaagctcactcacgtcatatataaatac |
10361365 |
T |
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| Q |
204 |
attatttaaagacnnnnnnnnnnnnnntgttacataaaatcttattgattcttttagttgaaaaattattgaccaaattatctttatccaccgatcaaac |
303 |
Q |
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| T |
10361366 |
atcatttaaaaacaaaaagtaaaaaa-tgttacataaaattgtattgattcttttagttgaaaaattattgaccaaattatctttatccaccgatcaaac |
10361464 |
T |
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| Q |
304 |
tccgaattatcatagttttttctcctcaacactggagagttaactnnnnnnncaattgtttgaattc-ttttgtgaatcttggttgatattttgcaaact |
402 |
Q |
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| T |
10361465 |
cccaaattatgatagctttttctcctcaaaactggagagttaactaaaaaaacaattgtttggattctttttgtgaatcttggtagatattttgcaaact |
10361564 |
T |
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| Q |
403 |
agtgtccatgtctttgctatttttt |
427 |
Q |
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| T |
10361565 |
agtgtccatgtctttgctatttttt |
10361589 |
T |
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