View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_6 (Length: 403)
Name: NF16764_low_6
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 90 - 391
Target Start/End: Complemental strand, 43009568 - 43009267
Alignment:
| Q |
90 |
ggttagtcgatcgatgtaaatattattcatattcaaattggtccatgaaatatttaatttaatatagggataaattctaatataaataattttgtagaga |
189 |
Q |
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| T |
43009568 |
ggttagtcgatcgatgtaaatattattcatattcaaattggtccatgaaatatttaatttaatatagggataaattctaatatatataattttgtagaga |
43009469 |
T |
|
| Q |
190 |
ctaaaataaaccaacaagactcaaaaacaaaaggaggtatactttgcttgctgacataatcaagaagatttcttaactttggcttattagtaagagaggg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43009468 |
ctaaaataaaccaacaagactcaaaaacaaaaggaggtataatttgcttgctgacataatcaagaagatttcttaactttggcttattagtaagagaggg |
43009369 |
T |
|
| Q |
290 |
aaggagaagagtaacttgtttttagactggtggaacaatcatatttcatgtttagagtatgcttgattttcctcttgtaatcaaatttgagtaccctatg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43009368 |
aaggagaagagtaacttgtttttagactggtggaacaatcatatttcatgtttagagtatgcttgattttcctcttgtaatcaaatttgagtaccctttg |
43009269 |
T |
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| Q |
390 |
ct |
391 |
Q |
| |
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|| |
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| T |
43009268 |
ct |
43009267 |
T |
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