View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_8 (Length: 350)
Name: NF16764_low_8
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 49006190 - 49006033
Alignment:
| Q |
76 |
ggtgggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggagaatgctccgcgggggtcag----ggaggctgcttgatgtaacca |
171 |
Q |
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| T |
49006190 |
ggtgggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggagaatgctccgcgggggtcagtcagggaggctgcttgatgtaacca |
49006091 |
T |
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| Q |
172 |
tttttaaaccctcattttaatttcagaaatgttatttagcacaatttttcaaaattgt |
229 |
Q |
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| T |
49006090 |
tttttaaaccctcattttaatttcagaaatgttatttagcacaatttttcaaaattgt |
49006033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 49005830 - 49005727
Alignment:
| Q |
243 |
tattagaataagaccgaactttaaaaactgaaaaaacacttacaaagttacttattcatagccatcaaagccttgcaataagtgaatcaactctttacga |
342 |
Q |
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| T |
49005830 |
tattaaaataagaccgaactttaaaaactgaaaaaacgcttacaaagttacttattgatagccatcaaagccttgcgataagtgaatcaactccttacga |
49005731 |
T |
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| Q |
343 |
gttg |
346 |
Q |
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|||| |
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| T |
49005730 |
gttg |
49005727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 38178515 - 38178425
Alignment:
| Q |
72 |
gctaggtgggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggaga--atgctccgcgggggtcagggaggctgct |
160 |
Q |
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| T |
38178515 |
gctaggtggaagaatgttgaggtggaggagagtgttagacggcacggtggagaagaggagaatatgctccgcgggggtcagggaggttgct |
38178425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 38178383 - 38178340
Alignment:
| Q |
161 |
tgatgtaaccatttttaaaccctcattttaatttcagaaatgtt |
204 |
Q |
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| T |
38178383 |
tgatgtaaccatttctaaaccctcattttaatttcacaaatgtt |
38178340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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