View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16764_low_9 (Length: 329)
Name: NF16764_low_9
Description: NF16764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16764_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 16468522 - 16468835
Alignment:
| Q |
1 |
aaaaaccagcaccattactattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctgaattaatct |
100 |
Q |
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| T |
16468522 |
aaaaaccagcaccataactattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctgaattaatct |
16468621 |
T |
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| Q |
101 |
tattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgtattg |
200 |
Q |
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| T |
16468622 |
tattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtccatgaatcaaaaacttctcactggattttgtattg |
16468721 |
T |
|
| Q |
201 |
aggacaagattgtgtgtgagaatgtgtagatgtttagatgttcttaattttaattttaatgaagatgtattgttgattatatctaacagtttattttcta |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
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| T |
16468722 |
aggacaagattgtatgtgagaatgtgtagatgtttagatgttcttaattttaattttaaagaatatgtagtgttgattatatctaacagtttattttcta |
16468821 |
T |
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| Q |
301 |
tgctccattgatga |
314 |
Q |
| |
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|||||||||||||| |
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| T |
16468822 |
tgctccattgatga |
16468835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 14301969 - 14301754
Alignment:
| Q |
19 |
tattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctgaattaatcttattgtgaatcgatatct |
118 |
Q |
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| T |
14301969 |
tattaatattaacactatttttatccttgaagttctcctgttctgaacgatgaatcgccactattagaacctgttttaatcttcttgtgaatcgctctca |
14301870 |
T |
|
| Q |
119 |
ctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgtattgaggacaagattgtgtgtg |
218 |
Q |
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| T |
14301869 |
ctgtcttgaagaattaccaaacaggtgttgaagaatcgattaaggtctatgaatcaaaaatttatcattggattttgtctcaaggacaagattgtgtgtg |
14301770 |
T |
|
| Q |
219 |
agaatgtgtagatgtt |
234 |
Q |
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| T |
14301769 |
agaatgtgtagatgtt |
14301754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 14319764 - 14319546
Alignment:
| Q |
19 |
tattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctg----aattaatcttattgtgaatcgat |
114 |
Q |
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| T |
14319764 |
tattaatattaatactattgttatccttaaatttctcctgttttgaacgatgaatcaccactattagaaaatgttctaattaatcttcttgtgaatcgct |
14319665 |
T |
|
| Q |
115 |
atctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgtattgaggacaagattgtg |
214 |
Q |
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|| ||||||||||||| |||| ||| ||||||||||| |||||||||||||||| ||||| || | | |||||||||| | |||||||||||||| |
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| T |
14319664 |
ctcactgtcttgaagaatcaccaaacacgtgttgaagaatcaattaaggtctatgaataaaaaatttattattggattttgtctcaaggacaagattgtg |
14319565 |
T |
|
| Q |
215 |
tgtgagaatgtgtagatgt |
233 |
Q |
| |
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|||||||||||||| |||| |
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| T |
14319564 |
tgtgagaatgtgtaaatgt |
14319546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 16731855 - 16731658
Alignment:
| Q |
1 |
aaaaaccagcaccattactattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactatta--gaatctgaattaat |
98 |
Q |
| |
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||||||| |||||| | ||||||||||||||||| ||||| | ||||| ||||||||| | | |||| || |||||||| |||||||| ||||| |
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| T |
16731855 |
aaaaaccttcaccatcattattaatattaacactattgttatttctaaatgtctcatgttctaatggatgaataaccactatatctgaatctgatttaat |
16731756 |
T |
|
| Q |
99 |
cttattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgt |
196 |
Q |
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| T |
16731755 |
cttctcgtgaattgctctctctatcatgaaaaattatcgaacaagtaatgaagaattgattagggtctgtgaatcaaaaacatctcagaggattttgt |
16731658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 17354456 - 17354518
Alignment:
| Q |
170 |
aatcaaaaacttctcactggattttgtattgaggacaagattgtgtgtgagaatgtgtagatg |
232 |
Q |
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| T |
17354456 |
aatcaaaaacttcttaatggattttgtctcaaggacaagattgagtgcgagaatgtgtagatg |
17354518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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