View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_high_11 (Length: 326)
Name: NF16765_high_11
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 10887808 - 10888064
Alignment:
| Q |
1 |
tggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatccaatgcttctttgcttcta |
100 |
Q |
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| T |
10887808 |
tggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatccaattcttctatgcttcta |
10887907 |
T |
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| Q |
101 |
ctcatactttgttgtccagtgatagactaataattaaaatatataatcttataacaattatgacataacaagtttcagatagttatggaatttcaaatat |
200 |
Q |
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| T |
10887908 |
ctcatactttgttgtccagtgatagactaataattaaaatatataatcttataacaattatgacataacaagtttcagatagttatggaatttcaaatat |
10888007 |
T |
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| Q |
201 |
ttcattctatattgtagatgacttcaaatatttatttttatggaagagttcgtttta |
257 |
Q |
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| T |
10888008 |
ttcattctatattgtagatgacttcaaatatttatttttatggaagagttcgtttta |
10888064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 10855881 - 10855997
Alignment:
| Q |
16 |
tttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatccaatgcttctttgcttctactcatactttgttgt |
115 |
Q |
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|||||||| ||| ||||||||||||||||| ||| ||||||||||||||||| |||| ||| |||||| | |||| ||||| |||||||||||||||| |
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| T |
10855881 |
tttttatttaatggatgatatttaaacaattaatctaattcctaaagctcataagtcatcaatatccatttattctatgctttgactcatactttgttgt |
10855980 |
T |
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| Q |
116 |
ccagtgatagactaata |
132 |
Q |
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| T |
10855981 |
ctagtgatggactaata |
10855997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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