View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16765_high_12 (Length: 320)
Name: NF16765_high_12
Description: NF16765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16765_high_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 31 - 320
Target Start/End: Complemental strand, 11944580 - 11944289
Alignment:
| Q |
31 |
ttaaagtattttagagagagctttatgttcctgcaatcggaagaattttttggtcaaagacnnnnnnnn--ttgattacacagtattgatttgaatttgt |
128 |
Q |
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| T |
11944580 |
ttaaagtattttagagagagctttatgttcctgcaatcggaataattttttggtcaaagacaaaaaaaaaattgattacaccgtattgatttgattttgt |
11944481 |
T |
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| Q |
129 |
aggtaatgggtgaaatatctgattggaatttagcactgcgtcaaacttatgaattagccgaagaatgtgttgaaataaacttctttggtgctgaaagagt |
228 |
Q |
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| T |
11944480 |
aggtaaggggtgaaatatctgattggaatttagcactgcgtcaaacttatgaattagccgaagaatgtgttgaaataaacttctttggtgctgaaagagt |
11944381 |
T |
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| Q |
229 |
aactgaagctcttattcccctgctccagttatctacttcacccagaattgtcaatgtctcctctaggcgtggaaaattcaaggtaaaactat |
320 |
Q |
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| T |
11944380 |
aactgaagctcttattcccctgctccagttatctacttcacctagaattgtcaatgtctcctctagacgtggaaaattcaaggtaaaactat |
11944289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 31 - 320
Target Start/End: Original strand, 11927244 - 11927535
Alignment:
| Q |
31 |
ttaaagtattttagagagagctttatgttcctgcaatcggaagaattttttggtcaaagacnnnnnnnnttgattacacagtattgatttgaatttgtag |
130 |
Q |
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| T |
11927244 |
ttaaagtattttagagagagctttatgttcctgcaatcggaagaattttttggtaaaagacaaaaataattgattacacagtattgatttgattttgtag |
11927343 |
T |
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| Q |
131 |
gtaatgggtgaaatatctgattggaatttagcactgcgtcaaacttatgaattag-ccgaa-gaatgtgttgaaataaacttctttggtgctgaaagagt |
228 |
Q |
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| T |
11927344 |
gtaaggggtgaaatatctgattggaatttagcactgcgtcaaacttatgaattaggccgaaagaatgtgttgaaataaacttctttggtgctgaaagagt |
11927443 |
T |
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| Q |
229 |
aactgaagctcttattcccctgctccagttatctacttcacccagaattgtcaatgtctcctctaggcgtggaaaattcaaggtaaaactat |
320 |
Q |
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| T |
11927444 |
aactgaagctcttattcccctgctccagttatctacttcacccagaattgtcaatgtctcctctagacgtggaaaatttaaggtaaaactat |
11927535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 36016904 - 36017024
Alignment:
| Q |
171 |
aaacttatgaattagccgaagaatgtgttgaaataaacttctttggtgctgaaagagtaactgaagctcttattcccctgctccagttatctacttcacc |
270 |
Q |
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|||| ||||| ||||| ||| ||||| | ||| |||||||| ||| | ||||||||||||||||||||| |||| || || || |||| ||||| || |
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| T |
36016904 |
aaacctatgagttagctgaaaaatgtttgaaaacaaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctcc |
36017003 |
T |
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| Q |
271 |
cagaattgtcaatgtctcctc |
291 |
Q |
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| T |
36017004 |
aacaattgtcaatgtttcctc |
36017024 |
T |
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